Index

A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z

A

a (mvpa2.datasets.cosmo.CosmoQueryEngine attribute)
abbr (mvpa2.atlases.base.Label attribute)
(mvpa2.atlases.warehouse.Label attribute)
absmin_distance() (in module mvpa2.clfs.distance)
Absolute() (in module mvpa2.misc.transformers)
absolute_features() (in module mvpa2.clfs.warehouse)
(in module mvpa2.mappers.fx)
accepts_dataset_as_samples() (in module mvpa2.base.types)
(in module mvpa2.clfs.base)
(in module mvpa2.clfs.blr)
(in module mvpa2.clfs.enet)
(in module mvpa2.clfs.gda)
(in module mvpa2.clfs.glmnet)
(in module mvpa2.clfs.gnb)
(in module mvpa2.clfs.gpr)
(in module mvpa2.clfs.knn)
(in module mvpa2.clfs.lars)
(in module mvpa2.clfs.mass)
(in module mvpa2.clfs.plr)
(in module mvpa2.clfs.ridge)
(in module mvpa2.clfs.smlr)
(in module mvpa2.featsel.base)
(in module mvpa2.mappers.base)
(in module mvpa2.mappers.boxcar)
(in module mvpa2.mappers.flatten)
(in module mvpa2.mappers.mdp_adaptor)
(in module mvpa2.mappers.projection)
(in module mvpa2.mappers.prototype)
(in module mvpa2.mappers.slicing)
(in module mvpa2.mappers.som)
(in module mvpa2.mappers.svd)
(in module mvpa2.mappers.zscore)
accepts_samples_as_dataset() (in module mvpa2.clfs.base)
ACTIONS (mvpa2.misc.cmdline.Option attribute)
active (mvpa2.base.verbosity.SetLogger attribute)
AdaptiveNormal (class in mvpa2.clfs.stats)
AdaptiveNullDist (class in mvpa2.clfs.stats)
AdaptiveRDist (class in mvpa2.clfs.stats)
add() (mvpa2.clfs.transerror.SummaryStatistics method)
(mvpa2.misc.cmdline.OptionGroups method)
(mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
add_center_fa (mvpa2.datasets.cosmo.Searchlight attribute)
(mvpa2.measures.searchlight.Searchlight attribute)
add_conversion() (mvpa2.kernels.base.Kernel class method)
(mvpa2.kernels.Kernel class method)
(mvpa2.kernels.libsvm.Kernel class method)
(mvpa2.kernels.sg.Kernel class method)
add_fa (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine attribute)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine attribute)
add_option_group() (mvpa2.misc.cmdline.OptionParser method)
add_surface() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
AddAxisMapper (class in mvpa2.mappers.shape)
affine (mvpa2.misc.plot.lightbox.SpatialImage attribute)
(mvpa2.misc.surfing.volgeom.VolGeom attribute)
AFNI
aggregate_features() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
all_equal() (in module mvpa2.base.dataset)
AltConstraints (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
alternative build procedure
ALWAYS_TYPED_ACTIONS (mvpa2.misc.cmdline.Option attribute)
analyzer (mvpa2.clfs.meta.ProxyClassifierSensitivityAnalyzer attribute)
(mvpa2.measures.base.ProxyClassifierSensitivityAnalyzer attribute)
analyzers (mvpa2.measures.base.CombinedFeaturewiseMeasure attribute)
anat_surf_to_gifti_image() (in module mvpa2.datasets.gifti)
annot2rawniml() (in module mvpa2.support.nibabel.afni_niml_annot)
API reference
append() (mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.base.learner.CompoundNode method)
(mvpa2.base.node.CompoundNode method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
apply() (mvpa2.atlases.base.Linear method)
(mvpa2.atlases.warehouse.Linear method)
apply_affine3() (mvpa2.misc.surfing.volgeom.VolGeom method)
apply_preprocessor() (mvpa2.kernels.sg.RealFeatures method)
args (mvpa2.measures.winner.partial attribute)
argsort() (in module mvpa2.mappers.fx)
array() (in module mvpa2.clfs.gpr)
(in module mvpa2.misc.neighborhood)
array_whereequal() (in module mvpa2.mappers.fx)
(in module mvpa2.misc.support)
ArrayCollectable (class in mvpa2.base.collections)
(class in mvpa2.datasets.niml)
as_char() (in module mvpa2.base.types)
as_descrete_time() (mvpa2.datasets.eventrelated.Event method)
(mvpa2.misc.data_generators.Event method)
(mvpa2.misc.fsl.Event method)
(mvpa2.misc.fsl.base.Event method)
(mvpa2.misc.io.base.Event method)
(mvpa2.misc.support.Event method)
(mvpa2.testing.datasets.Event method)
as_ls() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.libsvm.LSKernel method)
(mvpa2.kernels.sg.Kernel method)
as_np() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.NumpyKernel method)
(mvpa2.kernels.base.NumpyKernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.np.NumpyKernel method)
(mvpa2.kernels.sg.Kernel method)
as_pickable() (mvpa2.misc.surfing.volgeom.VolGeom method)
as_raw_ls() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.libsvm.LSKernel method)
(mvpa2.kernels.sg.Kernel method)
as_raw_np() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.NumpyKernel method)
(mvpa2.kernels.base.NumpyKernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.libsvm.LSKernel method)
(mvpa2.kernels.np.NumpyKernel method)
(mvpa2.kernels.sg.Kernel method)
as_raw_sg() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.sg.Kernel method)
(mvpa2.kernels.sg.SGKernel method)
as_sg() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.sg.Kernel method)
(mvpa2.kernels.sg.SGKernel method)
as_string() (mvpa2.clfs.base.ConfusionMatrix method)
(mvpa2.clfs.base.RegressionStatistics method)
(mvpa2.clfs.transerror.ConfusionMatrix method)
(mvpa2.clfs.transerror.RegressionStatistics method)
(mvpa2.clfs.transerror.SummaryStatistics method)
(mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
asarray() (in module mvpa2.clfs.gpr)
asobjarray() (in module mvpa2.base.hdf5)
(in module mvpa2.base.types)
(in module mvpa2.clfs.meta)
(in module mvpa2.clfs.plr)
(in module mvpa2.measures.base)
assert_almost_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_approx_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_array_almost_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_array_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_array_lequal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_array_less() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_collections_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_datasets_almost_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_datasets_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_dict_keys_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_objectarray_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_reprstr_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_string_equal() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assert_warnings() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
assign_conditionlabels() (in module mvpa2.datasets.eventrelated)
assure (mvpa2.clfs.stats.AttributePermutator attribute)
(mvpa2.generators.permutation.AttributePermutator attribute)
astimezone() (mvpa2.base.report.datetime method)
Atlas() (in module mvpa2.atlases)
(in module mvpa2.atlases.warehouse)
atlaslabeler
attr (mvpa2.clfs.stats.AttributePermutator attribute)
(mvpa2.generators.partition.Partitioner attribute)
(mvpa2.generators.permutation.AttributePermutator attribute)
attr_length (mvpa2.base.collections.UniformLengthCollection attribute)
AttrDataset (class in mvpa2.base.dataset)
(class in mvpa2.base.learner)
(class in mvpa2.datasets.base)
(class in mvpa2.datasets.gifti)
(class in mvpa2.featsel.helpers)
(class in mvpa2.measures.base)
(class in mvpa2.misc.surfing.queryengine)
attrfx (mvpa2.mappers.fx.FxMapper attribute)
AttributeMap (class in mvpa2.clfs.base)
(class in mvpa2.clfs.meta)
(class in mvpa2.datasets.formats)
(class in mvpa2.measures.base)
(class in mvpa2.misc.attrmap)
(class in mvpa2.misc.plot)
(class in mvpa2.misc.plot.base)
AttributePermutator (class in mvpa2.clfs.stats)
(class in mvpa2.generators.permutation)
AttributesCollector (class in mvpa2.base.state)
ATTRS (mvpa2.misc.cmdline.Option attribute)
auc_error() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
aucs (mvpa2.clfs.transerror.ROCCurve attribute)
auto_null_dist() (in module mvpa2.clfs.stats)
(in module mvpa2.clfs.transerror)
(in module mvpa2.measures.base)
auto_train (mvpa2.algorithms.group_clusterthr.Learner attribute)
(mvpa2.base.learner.Learner attribute)
(mvpa2.clfs.base.Learner attribute)
(mvpa2.mappers.base.Learner attribute)
(mvpa2.mappers.skl_adaptor.Learner attribute)
(mvpa2.measures.base.Learner attribute)
autocorrelated_noise() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
aux_get() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
aux_keys() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
average_node_edge_length (mvpa2.support.nibabel.surf.Surface attribute)
axis (mvpa2.mappers.fx.FxMapper attribute)

B

backports
Balancer (class in mvpa2.generators.resampling)
BaseAtlas (class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
BaseCollection (in module mvpa2.base.state)
basename() (in module mvpa2.base.verbosity)
BaseSearchlight (class in mvpa2.measures.searchlight)
BayesConfusionHypothesis (class in mvpa2.clfs.transerror)
BestDetector (class in mvpa2.featsel.base)
(class in mvpa2.featsel.helpers)
(class in mvpa2.featsel.ifs)
(class in mvpa2.featsel.rfe)
bestdetector (mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
bestindex (mvpa2.featsel.base.BestDetector attribute)
(mvpa2.featsel.helpers.BestDetector attribute)
(mvpa2.featsel.ifs.BestDetector attribute)
(mvpa2.featsel.rfe.BestDetector attribute)
between-subject classification
bias (mvpa2.measures.base.StaticMeasure attribute)
biases (mvpa2.clfs.smlr.SMLR attribute)
(mvpa2.clfs.warehouse.SMLR attribute)
(mvpa2.testing.clfs.SMLR attribute)
BibTeX (class in mvpa2.clfs.lars)
(class in mvpa2.featsel.rfe)
binary packages, [1]
BinaryClassifier (class in mvpa2.clfs.meta)
BinaryClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta)
(class in mvpa2.measures.base)
BinaryFxNode (class in mvpa2.featsel.rfe)
(class in mvpa2.mappers.fx)
(class in mvpa2.measures.base)
binomial_proportion_ci() (in module mvpa2.misc.stats)
binomial_proportion_ci_from_bool() (in module mvpa2.misc.stats)
BinomialProportionCI (class in mvpa2.mappers.fx)
Block-averaging, [1]
BLR (class in mvpa2.clfs.blr)
(class in mvpa2.clfs.warehouse)
BoostedClassifier (class in mvpa2.clfs.meta)
BoostedClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta)
(class in mvpa2.measures.base)
borrowdoc() (in module mvpa2.base.collections)
(in module mvpa2.base.dochelpers)
(in module mvpa2.base.state)
(in module mvpa2.mappers.base)
(in module mvpa2.mappers.fx)
(in module mvpa2.mappers.fxy)
(in module mvpa2.mappers.staticprojection)
(in module mvpa2.mappers.svd)
(in module mvpa2.misc.neighborhood)
borrowkwargs() (in module mvpa2.base.dochelpers)
(in module mvpa2.base.info)
(in module mvpa2.base.report)
(in module mvpa2.mappers.detrend)
(in module mvpa2.mappers.filters)
(in module mvpa2.mappers.zscore)
(in module mvpa2.measures.gnbsearchlight)
(in module mvpa2.measures.nnsearchlight)
(in module mvpa2.measures.searchlight)
(in module mvpa2.misc.neighborhood)
(in module mvpa2.misc.surfing.queryengine)
BoxcarMapper (class in mvpa2.algorithms.benchmarks.hyperalignment)
(class in mvpa2.datasets.eventrelated)
(class in mvpa2.mappers.boxcar)
(class in mvpa2.misc.plot.erp)
BrainVoyagerRTC (class in mvpa2.misc.bv)
(class in mvpa2.misc.bv.base)
build instructions
building from source
building on Windows
BytesIO (class in mvpa2.support.nibabel.afni_niml)

C

C (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
CachedKernel (class in mvpa2.kernels)
(class in mvpa2.kernels.base)
CachedQueryEngine (class in mvpa2.misc.neighborhood)
callback (mvpa2.measures.base.RepeatedMeasure attribute)
canonical_filename() (in module mvpa2.support.nibabel.afni_suma_spec)
cartesian_distance() (in module mvpa2.clfs.distance)
(in module mvpa2.clfs.meta)
(in module mvpa2.misc.neighborhood)
cdf() (mvpa2.clfs.stats.AdaptiveRDist method)
(mvpa2.clfs.stats.FixedNullDist method)
(mvpa2.clfs.stats.MCNullDist method)
(mvpa2.clfs.stats.Nonparametric method)
(mvpa2.clfs.stats.NullDist method)
ceil() (in module mvpa2.base.dochelpers)
(in module mvpa2.clfs.transerror)
center_of_mass (mvpa2.support.nibabel.surf.Surface attribute)
centroid (mvpa2.mappers.mdp_adaptor.PCAMapper attribute)
cfg
ChainLearner (class in mvpa2.base.learner)
(class in mvpa2.measures.winner)
ChainMapper (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.datasets.base)
(class in mvpa2.datasets.cosmo)
(class in mvpa2.mappers.base)
(class in mvpa2.mappers.flatten)
(class in mvpa2.measures.searchlight)
(class in mvpa2.misc.surfing.volgeom)
ChainNode (class in mvpa2.base.learner)
(class in mvpa2.base.node)
(class in mvpa2.mappers.base)
(class in mvpa2.measures.winner)
(class in mvpa2.misc.plot)
(class in mvpa2.misc.plot.base)
(class in mvpa2.viz)
change_temporarily() (mvpa2.base.state.ConditionalAttributesCollection method)
changelog
channels (mvpa2.datasets.eep.EEPBin attribute)
check_all_dependencies() (in module mvpa2.base.externals)
CHECK_METHODS (mvpa2.misc.cmdline.Option attribute)
check_range() (in module mvpa2.atlases.base)
(in module mvpa2.atlases.warehouse)
check_value() (mvpa2.misc.cmdline.Option method)
check_values() (mvpa2.misc.cmdline.OptionParser method)
chirp_linear() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
chisquare() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.stats)
Chunk
chunks (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
chunks_attr (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute)
(mvpa2.mappers.zscore.ZScoreMapper attribute)
circlearound_n2d() (mvpa2.misc.surfing.volsurf.VolumeBasedSurface method)
(mvpa2.support.nibabel.surf.Surface method)
citation
Classifier, [1], [2]
(class in mvpa2.clfs.base)
(class in mvpa2.clfs.blr)
(class in mvpa2.clfs.enet)
(class in mvpa2.clfs.gda)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gnb)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.knn)
(class in mvpa2.clfs.lars)
(class in mvpa2.clfs.mass)
(class in mvpa2.clfs.meta)
(class in mvpa2.clfs.plr)
(class in mvpa2.clfs.ridge)
(class in mvpa2.clfs.smlr)
(class in mvpa2.testing.clfs)
ClassifierCombiner (class in mvpa2.clfs.meta)
ClassifierError (class in mvpa2.clfs.transerror)
(class in mvpa2.featsel.rfe)
ClassWithCollections (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.node)
(class in mvpa2.base.state)
(class in mvpa2.clfs.meta)
(class in mvpa2.clfs.stats)
(class in mvpa2.clfs.transerror)
(class in mvpa2.featsel.helpers)
(class in mvpa2.kernels.base)
(class in mvpa2.misc.transformers)
clean() (mvpa2.clfs.stats.MCNullDist method)
cleanup() (mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.sg.Kernel method)
clear() (mvpa2.base.report.Report method)
(mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
clf (mvpa2.clfs.enet.Sensitivity attribute)
(mvpa2.clfs.glmnet.Sensitivity attribute)
(mvpa2.clfs.gpr.Sensitivity attribute)
(mvpa2.clfs.lars.Sensitivity attribute)
(mvpa2.clfs.meta.ProxyClassifier attribute)
(mvpa2.clfs.plr.Sensitivity attribute)
(mvpa2.clfs.smlr.Sensitivity attribute)
(mvpa2.clfs.transerror.ClassifierError attribute)
(mvpa2.featsel.rfe.ClassifierError attribute)
(mvpa2.featsel.rfe.ProxyClassifier attribute)
(mvpa2.featsel.rfe.Sensitivity attribute)
(mvpa2.measures.base.Sensitivity attribute)
clfs (mvpa2.clfs.meta.BoostedClassifier attribute)
(mvpa2.clfs.meta.TreeClassifier attribute)
clone() (mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.testing.clfs.Classifier method)
close() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
closed (mvpa2.support.nibabel.afni_niml.BytesIO attribute)
coarsen_chunks() (in module mvpa2.datasets.miscfx)
(in module mvpa2.generators.partition)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
code swarm
collect_nose_tests() (in module mvpa2.tests)
collect_test_suites() (in module mvpa2.tests)
collect_unit_tests() (in module mvpa2.tests)
Collectable (class in mvpa2.base.attributes)
(class in mvpa2.base.collections)
(class in mvpa2.clfs.transerror)
Collection (class in mvpa2.base.collections)
(class in mvpa2.base.state)
(class in mvpa2.datasets.cosmo)
ColumnData (class in mvpa2.misc.bv)
(class in mvpa2.misc.bv.base)
(class in mvpa2.misc.fsl)
(class in mvpa2.misc.fsl.base)
(class in mvpa2.misc.io)
(class in mvpa2.misc.io.base)
combinations (class in mvpa2.measures.rsa)
combine() (mvpa2.base.report.datetime method)
combine_left_right() (in module mvpa2.support.nibabel.afni_suma_spec)
combined_analyzer (mvpa2.clfs.meta.BoostedClassifierSensitivityAnalyzer attribute)
(mvpa2.measures.base.BoostedClassifierSensitivityAnalyzer attribute)
CombinedClassifier (class in mvpa2.clfs.meta)
CombinedFeatureSelection (class in mvpa2.featsel.base)
CombinedFeaturewiseMeasure (class in mvpa2.measures.base)
CombinedLearner (class in mvpa2.base.learner)
CombinedMapper (class in mvpa2.mappers.base)
CombinedNode (class in mvpa2.base.learner)
(class in mvpa2.base.node)
combiner (mvpa2.clfs.meta.CombinedClassifier attribute)
command line, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17]
CompoundLearner (class in mvpa2.base.learner)
CompoundNode (class in mvpa2.base.learner)
(class in mvpa2.base.node)
CompoundOneWayAnova (class in mvpa2.measures.anova)
compute() (mvpa2.clfs.transerror.SummaryStatistics method)
(mvpa2.kernels.CachedKernel method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.PrecomputedKernel method)
(mvpa2.kernels.base.CachedKernel method)
(mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.base.PrecomputedKernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.libsvm.LSKernel method)
(mvpa2.kernels.sg.Kernel method)
(mvpa2.kernels.sg.PrecomputedSGKernel method)
compute_feature_scores() (in module mvpa2.algorithms.searchlight_hyperalignment)
compute_gradient_log_marginal_likelihood() (mvpa2.clfs.gpr.GPR method)
(mvpa2.clfs.warehouse.GPR method)
compute_gradient_log_marginal_likelihood_logscale() (mvpa2.clfs.gpr.GPR method)
(mvpa2.clfs.warehouse.GPR method)
compute_lml_gradient() (mvpa2.clfs.gpr.SquaredExponentialKernel method)
(mvpa2.clfs.warehouse.SquaredExponentialKernel method)
(mvpa2.kernels.np.ConstantKernel method)
(mvpa2.kernels.np.ExponentialKernel method)
(mvpa2.kernels.np.SquaredExponentialKernel method)
(mvpa2.measures.irelief.ExponentialKernel method)
compute_lml_gradient_logscale() (mvpa2.clfs.gpr.SquaredExponentialKernel method)
(mvpa2.clfs.warehouse.SquaredExponentialKernel method)
(mvpa2.kernels.np.ConstantKernel method)
(mvpa2.kernels.np.ExponentialKernel method)
(mvpa2.kernels.np.SquaredExponentialKernel method)
(mvpa2.measures.irelief.ExponentialKernel method)
compute_log_marginal_likelihood() (mvpa2.clfs.blr.BLR method)
(mvpa2.clfs.gpr.GPR method)
(mvpa2.clfs.warehouse.BLR method)
(mvpa2.clfs.warehouse.GPR method)
compute_M_H() (mvpa2.measures.irelief.IterativeRelief method)
(mvpa2.measures.irelief.IterativeRelief_Devel method)
compute_ts_boxplot_stats() (in module mvpa2.misc.stats)
computed() (mvpa2.clfs.similarity.Similarity method)
(mvpa2.clfs.similarity.SingleDimensionSimilarity method)
(mvpa2.clfs.similarity.StreamlineSimilarity method)
(mvpa2.kernels.Kernel method)
(mvpa2.kernels.base.Kernel method)
(mvpa2.kernels.libsvm.Kernel method)
(mvpa2.kernels.sg.Kernel method)
concat_as (mvpa2.measures.base.RepeatedMeasure attribute)
concat_ts_boxplot_stats() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
Conditional Attribute
ConditionalAttribute (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.base.attributes)
(class in mvpa2.base.learner)
(class in mvpa2.base.node)
(class in mvpa2.base.state)
(class in mvpa2.clfs.base)
(class in mvpa2.clfs.blr)
(class in mvpa2.clfs.gda)
(class in mvpa2.clfs.gnb)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.knn)
(class in mvpa2.clfs.mass)
(class in mvpa2.clfs.meta)
(class in mvpa2.clfs.plr)
(class in mvpa2.clfs.smlr)
(class in mvpa2.clfs.stats)
(class in mvpa2.clfs.transerror)
(class in mvpa2.featsel.base)
(class in mvpa2.featsel.helpers)
(class in mvpa2.featsel.ifs)
(class in mvpa2.featsel.rfe)
(class in mvpa2.kernels.np)
(class in mvpa2.measures.base)
(class in mvpa2.measures.searchlight)
(class in mvpa2.misc.transformers)
ConditionalAttributesCollection (class in mvpa2.base.state)
config file
ConfigManager (class in mvpa2.base)
(class in mvpa2.base.config)
configuration
Confusion (class in mvpa2.clfs.transerror)
confusion (mvpa2.clfs.transerror.ClassifierError attribute)
(mvpa2.featsel.rfe.ClassifierError attribute)
Confusion Matrix
ConfusionBasedError (class in mvpa2.clfs.transerror)
ConfusionMatrix (class in mvpa2.clfs.base)
(class in mvpa2.clfs.transerror)
ConfusionMatrixError (class in mvpa2.clfs.transerror)
conjtransp() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
connected_components() (mvpa2.support.nibabel.surf.Surface method)
connected_components_slow() (mvpa2.support.nibabel.surf.Surface method)
CONST_ACTIONS (mvpa2.misc.cmdline.Option attribute)
ConstantKernel (class in mvpa2.kernels.np)
Constraint (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
Constraints (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
contains_ijk() (mvpa2.misc.surfing.volgeom.VolGeom method)
contains_lin() (mvpa2.misc.surfing.volgeom.VolGeom method)
contextmanager() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
convert_value() (mvpa2.misc.cmdline.Option method)
coo_matrix (class in mvpa2.algorithms.searchlight_hyperalignment)
coordinates_to_box_indices() (mvpa2.support.nibabel.surf.Surface method)
coordinates_to_grey_distance_mm() (mvpa2.misc.surfing.volsurf.VolSurf method)
coordT (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
copy() (in module mvpa2.featsel.ifs)
(in module mvpa2.featsel.rfe)
(in module mvpa2.misc.support)
(mvpa2.algorithms.group_clusterthr.Counter method)
(mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.base.collections.Collection method)
(mvpa2.base.collections.UniformLengthCollection method)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.base.state.Collection method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.base.HollowSamples method)
(mvpa2.datasets.cosmo.Collection method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
(mvpa2.testing.datasets.HollowSamples method)
copy_feature_matrix() (mvpa2.kernels.sg.RealFeatures method)
corouge() (in module mvpa2.clfs.distance)
corr_error() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
corr_error_prob() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
CorrCoef (class in mvpa2.measures.corrcoef)
correlation() (in module mvpa2.misc.errorfx)
CorrStability (class in mvpa2.measures.corrstability)
cosmo_dataset() (in module mvpa2.datasets.cosmo)
CosmoQueryEngine (class in mvpa2.datasets.cosmo)
CosmoSearchlight (class in mvpa2.datasets.cosmo)
Counter (class in mvpa2.algorithms.group_clusterthr)
Courses
cov (mvpa2.clfs.gda.GDA attribute)
create_merged_copy() (mvpa2.kernels.sg.RealFeatures method)
Cross-validation, [1]
cross-validation, [1], [2], [3], [4]
crossval
CrossValidation (class in mvpa2.measures.base)
csc_matrix (class in mvpa2.algorithms.searchlight_hyperalignment)
ctime() (mvpa2.base.report.datetime method)
curvature_from_any() (in module mvpa2.misc.plot.flat_surf)
CustomKernel (class in mvpa2.kernels)
(class in mvpa2.kernels.base)
CustomPartitioner (class in mvpa2.generators.partition)
CustomSGKernel (class in mvpa2.kernels.sg)

D

DAE (in module mvpa2.base.dataset)
data (mvpa2.datasets.eep.DataReader attribute)
(mvpa2.misc.io.DataReader attribute)
(mvpa2.misc.io.base.DataReader attribute)
datameasure (mvpa2.datasets.cosmo.Searchlight attribute)
(mvpa2.measures.searchlight.Searchlight attribute)
dataobj (mvpa2.misc.plot.lightbox.SpatialImage attribute)
DataReader (class in mvpa2.datasets.eep)
(class in mvpa2.misc.io)
(class in mvpa2.misc.io.base)
Dataset
(class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.clfs.base)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.knn)
(class in mvpa2.clfs.lars)
(class in mvpa2.clfs.meta)
(class in mvpa2.clfs.plr)
(class in mvpa2.clfs.smlr)
(class in mvpa2.clfs.stats)
(class in mvpa2.clfs.transerror)
(class in mvpa2.datasets.base)
(class in mvpa2.datasets.cosmo)
(class in mvpa2.datasets.eeglab)
(class in mvpa2.datasets.eep)
(class in mvpa2.datasets.eventrelated)
(class in mvpa2.datasets.formats)
(class in mvpa2.datasets.gifti)
(class in mvpa2.datasets.miscfx)
(class in mvpa2.datasets.mri)
(class in mvpa2.datasets.niml)
(class in mvpa2.mappers.filters)
(class in mvpa2.mappers.fx)
(class in mvpa2.mappers.fxy)
(class in mvpa2.mappers.glm)
(class in mvpa2.mappers.shape)
(class in mvpa2.mappers.zscore)
(class in mvpa2.measures.anova)
(class in mvpa2.measures.base)
(class in mvpa2.measures.corrcoef)
(class in mvpa2.measures.irelief)
(class in mvpa2.measures.noiseperturbation)
(class in mvpa2.measures.rsa)
(class in mvpa2.measures.searchlight)
(class in mvpa2.measures.statsmodels_adaptor)
(class in mvpa2.measures.winner)
(class in mvpa2.misc.data_generators)
(class in mvpa2.misc.plot.flat_surf)
(class in mvpa2.testing.clfs)
(class in mvpa2.testing.datasets)
Dataset attribute
Dataset concepts
Dataset Database
Dataset layout
DatasetAttribute (class in mvpa2.base.collections)
DatasetAttributeExtractor (class in mvpa2.base.dataset)
(class in mvpa2.mappers.mdp_adaptor)
DatasetAttributesCollection (class in mvpa2.base.collections)
(class in mvpa2.base.dataset)
(class in mvpa2.base.node)
(class in mvpa2.datasets.niml)
datasetmethod() (in module mvpa2.base.dataset)
(in module mvpa2.datasets.miscfx)
date() (mvpa2.base.report.datetime method)
datetime (class in mvpa2.base.report)
dcorcoef() (in module mvpa2.misc.dcov)
dCOV() (in module mvpa2.misc.dcov)
Debian, [1]
debug, [1]
DebugLogger (class in mvpa2.base)
(class in mvpa2.base.verbosity)
decode_escape() (in module mvpa2.support.nibabel.afni_niml)
Decoding
deepcopy() (in module mvpa2.algorithms.hyperalignment)
(in module mvpa2.clfs.base)
(in module mvpa2.mappers.skl_adaptor)
(in module mvpa2.measures.noiseperturbation)
(in module mvpa2.misc.support)
default (mvpa2.algorithms.group_clusterthr.Parameter attribute)
(mvpa2.algorithms.hyperalignment.Parameter attribute)
(mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute)
(mvpa2.base.param.Parameter attribute)
(mvpa2.clfs.base.Parameter attribute)
(mvpa2.clfs.gda.Parameter attribute)
(mvpa2.clfs.glmnet.Parameter attribute)
(mvpa2.clfs.gnb.Parameter attribute)
(mvpa2.clfs.gpr.Parameter attribute)
(mvpa2.clfs.meta.Parameter attribute)
(mvpa2.clfs.smlr.Parameter attribute)
(mvpa2.kernels.base.Parameter attribute)
(mvpa2.kernels.libsvm.Parameter attribute)
(mvpa2.kernels.np.Parameter attribute)
(mvpa2.kernels.sg.Parameter attribute)
(mvpa2.mappers.detrend.Parameter attribute)
(mvpa2.mappers.filters.Parameter attribute)
(mvpa2.mappers.fx.Parameter attribute)
(mvpa2.mappers.glm.Parameter attribute)
(mvpa2.mappers.procrustean.Parameter attribute)
(mvpa2.measures.rsa.Parameter attribute)
deprecated (class in mvpa2.generators.partition)
(class in mvpa2.generators.permutation)
(class in mvpa2.misc.surfing.volume_mask_dict)
descr (mvpa2.algorithms.hyperalignment.ClassWithCollections attribute)
(mvpa2.algorithms.searchlight_hyperalignment.ClassWithCollections attribute)
(mvpa2.base.node.ClassWithCollections attribute)
(mvpa2.base.state.ClassWithCollections attribute)
(mvpa2.clfs.meta.ClassWithCollections attribute)
(mvpa2.clfs.stats.ClassWithCollections attribute)
(mvpa2.clfs.transerror.ClassWithCollections attribute)
(mvpa2.featsel.helpers.ClassWithCollections attribute)
(mvpa2.kernels.base.ClassWithCollections attribute)
(mvpa2.misc.transformers.ClassWithCollections attribute)
describe
descriptions (mvpa2.clfs.warehouse.Warehouse attribute)
design2labels() (in module mvpa2.misc.io)
(in module mvpa2.misc.io.base)
destroy() (mvpa2.misc.cmdline.OptionGroup method)
(mvpa2.misc.cmdline.OptionParser method)
detrending
development
development snapshot
dfx (mvpa2.clfs.knn.kNN attribute)
(mvpa2.clfs.warehouse.kNN attribute)
(mvpa2.testing.clfs.kNN attribute)
diagonal() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
dijkstra_distance() (mvpa2.support.nibabel.surf.Surface method)
dijkstra_shortest_path() (mvpa2.support.nibabel.surf.Surface method)
dijkstra_shortest_path_visiting() (mvpa2.support.nibabel.surf.Surface method)
dirname() (in module mvpa2.base.verbosity)
disable() (mvpa2.base.state.ConditionalAttributesCollection method)
disable_interspersed_args() (mvpa2.misc.cmdline.OptionParser method)
disc_surface_queryengine() (in module mvpa2.misc.surfing.queryengine)
disc_voxel_attributes() (mvpa2.misc.surfing.surf_voxel_selection.VoxelSelector method)
disc_voxel_indices_and_attributes() (mvpa2.misc.surfing.surf_voxel_selection.VoxelSelector method)
distance (mvpa2.atlases.base.ReferencesAtlas attribute)
(mvpa2.atlases.ReferencesAtlas attribute)
(mvpa2.atlases.warehouse.ReferencesAtlas attribute)
distance() (in module mvpa2.misc.surfing.volgeom)
distance_func (mvpa2.algorithms.searchlight_hyperalignment.Sphere attribute)
(mvpa2.measures.gnbsearchlight.Sphere attribute)
(mvpa2.measures.nnsearchlight.Sphere attribute)
(mvpa2.measures.searchlight.Sphere attribute)
(mvpa2.misc.neighborhood.Sphere attribute)
(mvpa2.misc.surfing.volgeom.Sphere attribute)
DistPValue (class in mvpa2.misc.transformers)
dists() (mvpa2.clfs.stats.MCNullDist method)
(mvpa2.clfs.stats.NullDist method)
Documentation overview
Doi (class in mvpa2)
(class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.clfs.lars)
(class in mvpa2.clfs.smlr)
(class in mvpa2.clfs.transerror)
(class in mvpa2.featsel.rfe)
(class in mvpa2.measures.searchlight)
dok_matrix (class in mvpa2.algorithms.group_clusterthr)
dot() (in module mvpa2.clfs.gda)
(in module mvpa2.clfs.gnb)
double_gamma_hrf() (in module mvpa2.misc.data_generators)
(in module mvpa2.misc.fx)
(in module mvpa2.testing.datasets)
dset2rawniml() (in module mvpa2.support.nibabel.afni_niml_dset)
dshape (mvpa2.datasets.base.StaticFeatureSelection attribute)
(mvpa2.datasets.cosmo.StaticFeatureSelection attribute)
(mvpa2.featsel.base.StaticFeatureSelection attribute)
(mvpa2.featsel.ifs.StaticFeatureSelection attribute)
(mvpa2.mappers.flatten.StaticFeatureSelection attribute)
(mvpa2.measures.searchlight.StaticFeatureSelection attribute)
dst() (mvpa2.base.report.datetime method)
dt (mvpa2.datasets.eep.EEPBin attribute)
dtype (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute)
(mvpa2.mappers.zscore.ZScoreMapper attribute)
dual_gaussian() (in module mvpa2.misc.fx)
dual_positive_gaussian() (in module mvpa2.misc.fx)
dumb_feature_binary_dataset() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
dumb_feature_dataset() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
dump
durations (mvpa2.misc.fsl.base.FslEV3 attribute)
(mvpa2.misc.fsl.FslEV3 attribute)

E

edge2face (mvpa2.support.nibabel.surf.Surface attribute)
eeglab_dataset() (in module mvpa2.datasets.eeglab)
eep_dataset() (in module mvpa2.datasets.eep)
EEPBin (class in mvpa2.datasets.eep)
element_sizes (mvpa2.algorithms.searchlight_hyperalignment.Sphere attribute)
(mvpa2.measures.gnbsearchlight.Sphere attribute)
(mvpa2.measures.nnsearchlight.Sphere attribute)
(mvpa2.measures.searchlight.Sphere attribute)
(mvpa2.misc.neighborhood.Sphere attribute)
(mvpa2.misc.surfing.volgeom.Sphere attribute)
elements() (mvpa2.algorithms.group_clusterthr.Counter method)
ElementSelector (class in mvpa2.featsel.helpers)
(class in mvpa2.mappers.svd)
enable() (mvpa2.base.state.ConditionalAttributesCollection method)
enable_interspersed_args() (mvpa2.misc.cmdline.OptionParser method)
enabled (mvpa2.algorithms.hyperalignment.ConditionalAttribute attribute)
(mvpa2.base.attributes.ConditionalAttribute attribute)
(mvpa2.base.learner.ConditionalAttribute attribute)
(mvpa2.base.node.ConditionalAttribute attribute)
(mvpa2.base.state.ConditionalAttribute attribute)
(mvpa2.base.state.ConditionalAttributesCollection attribute)
(mvpa2.clfs.base.ConditionalAttribute attribute)
(mvpa2.clfs.blr.ConditionalAttribute attribute)
(mvpa2.clfs.gda.ConditionalAttribute attribute)
(mvpa2.clfs.gnb.ConditionalAttribute attribute)
(mvpa2.clfs.gpr.ConditionalAttribute attribute)
(mvpa2.clfs.knn.ConditionalAttribute attribute)
(mvpa2.clfs.mass.ConditionalAttribute attribute)
(mvpa2.clfs.meta.ConditionalAttribute attribute)
(mvpa2.clfs.plr.ConditionalAttribute attribute)
(mvpa2.clfs.smlr.ConditionalAttribute attribute)
(mvpa2.clfs.stats.ConditionalAttribute attribute)
(mvpa2.clfs.transerror.ConditionalAttribute attribute)
(mvpa2.featsel.base.ConditionalAttribute attribute)
(mvpa2.featsel.helpers.ConditionalAttribute attribute)
(mvpa2.featsel.ifs.ConditionalAttribute attribute)
(mvpa2.featsel.rfe.ConditionalAttribute attribute)
(mvpa2.kernels.np.ConditionalAttribute attribute)
(mvpa2.measures.base.ConditionalAttribute attribute)
(mvpa2.measures.searchlight.ConditionalAttribute attribute)
(mvpa2.misc.transformers.ConditionalAttribute attribute)
encode_escape() (in module mvpa2.support.nibabel.afni_niml)
ENET (class in mvpa2.clfs.enet)
ENETWeights (class in mvpa2.clfs.enet)
enhanced_doc_string() (in module mvpa2.atlases.base)
(in module mvpa2.atlases.fsl)
(in module mvpa2.atlases.warehouse)
(in module mvpa2.base.dochelpers)
(in module mvpa2.base.state)
(in module mvpa2.clfs.transerror)
(in module mvpa2.mappers.projection)
(in module mvpa2.measures.base)
(in module mvpa2.misc.io.base)
EnsureBool (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
EnsureChoice (class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.gda)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gnb)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.filters)
(class in mvpa2.mappers.fx)
(class in mvpa2.mappers.procrustean)
(class in mvpa2.measures.rsa)
EnsureDType (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
EnsureFloat (class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.smlr)
(class in mvpa2.kernels.np)
(class in mvpa2.mappers.fx)
EnsureInt (class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.filters)
(class in mvpa2.mappers.fx)
EnsureListOf (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.kernels.np)
(class in mvpa2.mappers.fx)
EnsureNone (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.filters)
(class in mvpa2.mappers.fx)
EnsureRange (class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
EnsureStr (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
EnsureTupleOf (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.constraints)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.smlr)
(class in mvpa2.mappers.fx)
environment variable
MVPA_DEBUG, [1], [2]
MVPA_DEBUG_METRICS
MVPA_DEBUG_WTF
MVPA_EXAMPLES_INTERACTIVE
MVPA_MATPLOTLIB_BACKEND
MVPA_QUICKTEST
MVPA_SEED
MVPA_SVM_BACKEND
MVPA_TESTS_LABILE, [1]
MVPA_TESTS_QUICK, [1]
MVPA_VERBOSE
MVPA_VERBOSE_OUTPUT
MVPA_WARNINGS_BT
MVPA_WARNINGS_COUNT, [1]
MVPA_WARNINGS_SUPPRESS
Epoch
eq_() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
equal_default (mvpa2.algorithms.group_clusterthr.Parameter attribute)
(mvpa2.algorithms.hyperalignment.Parameter attribute)
(mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute)
(mvpa2.base.param.Parameter attribute)
(mvpa2.clfs.base.Parameter attribute)
(mvpa2.clfs.gda.Parameter attribute)
(mvpa2.clfs.glmnet.Parameter attribute)
(mvpa2.clfs.gnb.Parameter attribute)
(mvpa2.clfs.gpr.Parameter attribute)
(mvpa2.clfs.meta.Parameter attribute)
(mvpa2.clfs.smlr.Parameter attribute)
(mvpa2.kernels.base.Parameter attribute)
(mvpa2.kernels.libsvm.Parameter attribute)
(mvpa2.kernels.np.Parameter attribute)
(mvpa2.kernels.sg.Parameter attribute)
(mvpa2.mappers.detrend.Parameter attribute)
(mvpa2.mappers.filters.Parameter attribute)
(mvpa2.mappers.fx.Parameter attribute)
(mvpa2.mappers.glm.Parameter attribute)
(mvpa2.mappers.procrustean.Parameter attribute)
(mvpa2.measures.rsa.Parameter attribute)
error (mvpa2.clfs.base.ConfusionMatrix attribute)
(mvpa2.clfs.base.RegressionStatistics attribute)
(mvpa2.clfs.transerror.ConfusionMatrix attribute)
(mvpa2.clfs.transerror.RegressionStatistics attribute)
(mvpa2.clfs.transerror.SummaryStatistics attribute)
error() (in module mvpa2.base)
(mvpa2.misc.cmdline.OptionParser method)
errorfx (mvpa2.measures.base.CrossValidation attribute)
(mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute)
(mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute)
escape_xml() (in module mvpa2.base.report)
eta_string() (in module mvpa2.base.progress)
euclidean_distance() (mvpa2.support.nibabel.surf.Surface method)
Event (class in mvpa2.datasets.eventrelated)
(class in mvpa2.misc.data_generators)
(class in mvpa2.misc.fsl)
(class in mvpa2.misc.fsl.base)
(class in mvpa2.misc.io.base)
(class in mvpa2.misc.support)
(class in mvpa2.testing.datasets)
event-related fMRI, [1], [2]
eventrelated_dataset() (in module mvpa2.datasets.eventrelated)
events2sample_attr() (in module mvpa2.datasets.eventrelated)
example
examples
ExcludeTargetsCombinationsPartitioner (class in mvpa2.generators.partition)
exec
Exemplar
exists() (in module mvpa2.base.dochelpers)
(in module mvpa2.base.externals)
(in module mvpa2.kernels.sg)
exit() (mvpa2.misc.cmdline.OptionParser method)
expand_contraint_spec() (in module mvpa2.algorithms.hyperalignment)
(in module mvpa2.algorithms.searchlight_hyperalignment)
(in module mvpa2.base.constraints)
(in module mvpa2.base.param)
(in module mvpa2.clfs.glmnet)
(in module mvpa2.clfs.smlr)
(in module mvpa2.mappers.fx)
expand_prog_name() (mvpa2.misc.cmdline.OptionParser method)
ExponentialKernel (class in mvpa2.kernels.np)
(class in mvpa2.measures.irelief)
extent (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
(mvpa2.misc.fsl.melodic.MelodicResults attribute)
extract_boxcar_event_samples() (in module mvpa2.datasets.eventrelated)

F

fa (mvpa2.datasets.cosmo.CosmoQueryEngine attribute)
face_areas (mvpa2.support.nibabel.surf.Surface attribute)
face_edge_length (mvpa2.support.nibabel.surf.Surface attribute)
face_normals (mvpa2.support.nibabel.surf.Surface attribute)
faces (mvpa2.support.nibabel.surf.Surface attribute)
factor_names (mvpa2.mappers.flatten.ProductFlattenMapper attribute)
factor_values (mvpa2.mappers.flatten.ProductFlattenMapper attribute)
FactorialPartitioner (class in mvpa2.generators.partition)
Feature
Feature attribute
Feature Selection
feature selection
feature_id2linear_voxel_ids() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
feature_id2nearest_vertex_id() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
feature_ids
(mvpa2.clfs.enet.Sensitivity attribute)
(mvpa2.clfs.glmnet.Sensitivity attribute)
(mvpa2.clfs.gpr.Sensitivity attribute)
(mvpa2.clfs.lars.Sensitivity attribute)
(mvpa2.clfs.plr.Sensitivity attribute)
(mvpa2.clfs.smlr.Sensitivity attribute)
(mvpa2.featsel.rfe.Sensitivity attribute)
(mvpa2.measures.base.Sensitivity attribute)
feature_loser_measure() (in module mvpa2.measures.winner)
feature_winner_measure() (in module mvpa2.measures.winner)
FeatureAttribute (class in mvpa2.base.collections)
FeatureAttributesCollection (class in mvpa2.base.collections)
(class in mvpa2.base.dataset)
(class in mvpa2.base.node)
(class in mvpa2.datasets.gifti)
(class in mvpa2.datasets.niml)
(class in mvpa2.generators.base)
FeatureSelection (class in mvpa2.featsel.base)
FeatureSelectionClassifier (class in mvpa2.clfs.meta)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.featsel.rfe)
FeatureSelectionClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta)
(class in mvpa2.measures.base)
FeatureSelectionHyperalignment (class in mvpa2.algorithms.searchlight_hyperalignment)
FeaturewiseMeasure (class in mvpa2.measures.anova)
(class in mvpa2.measures.base)
(class in mvpa2.measures.corrcoef)
(class in mvpa2.measures.corrstability)
(class in mvpa2.measures.irelief)
(class in mvpa2.measures.noiseperturbation)
(class in mvpa2.measures.statsmodels_adaptor)
(class in mvpa2.testing.clfs)
Fedora
felements (mvpa2.clfs.warehouse.FractionTailSelector attribute)
(mvpa2.featsel.base.FractionTailSelector attribute)
(mvpa2.featsel.helpers.FractionTailSelector attribute)
(mvpa2.featsel.rfe.FractionTailSelector attribute)
fft_resample() (in module mvpa2.mappers.filters)
FFTResampleMapper (class in mvpa2.mappers.filters)
figure() (mvpa2.base.report.Report method)
figures() (mvpa2.base.report.Report method)
filename2vertices_faces_metadata() (in module mvpa2.support.nibabel.surf_gifti)
files_types (mvpa2.misc.plot.lightbox.SpatialImage attribute)
filespec_to_file_map() (mvpa2.misc.plot.lightbox.SpatialImage class method)
filespec_to_files() (mvpa2.misc.plot.lightbox.SpatialImage class method)
fill() (mvpa2.base.state.TextWrapper method)
fill_nonfinites() (in module mvpa2.misc.plot.scatter)
filtfilt() (in module mvpa2.mappers.filters)
find() (mvpa2.atlases.base.LabelsLevel method)
(mvpa2.atlases.FSLProbabilisticAtlas method)
(mvpa2.atlases.fsl.FSLProbabilisticAtlas method)
(mvpa2.atlases.fsl.LabelsLevel method)
(mvpa2.atlases.warehouse.FSLProbabilisticAtlas method)
(mvpa2.atlases.warehouse.LabelsLevel method)
find_attribute_node() (in module mvpa2.support.nibabel.afni_niml)
find_collection() (mvpa2.algorithms.group_clusterthr.Dataset method)
(mvpa2.algorithms.hyperalignment.Dataset method)
(mvpa2.clfs.base.Dataset method)
(mvpa2.clfs.glmnet.Dataset method)
(mvpa2.clfs.gpr.Dataset method)
(mvpa2.clfs.knn.Dataset method)
(mvpa2.clfs.lars.Dataset method)
(mvpa2.clfs.meta.Dataset method)
(mvpa2.clfs.plr.Dataset method)
(mvpa2.clfs.smlr.Dataset method)
(mvpa2.clfs.stats.Dataset method)
(mvpa2.clfs.transerror.Dataset method)
(mvpa2.datasets.base.Dataset method)
(mvpa2.datasets.cosmo.Dataset method)
(mvpa2.datasets.eeglab.Dataset method)
(mvpa2.datasets.eep.Dataset method)
(mvpa2.datasets.eventrelated.Dataset method)
(mvpa2.datasets.formats.Dataset method)
(mvpa2.datasets.gifti.Dataset method)
(mvpa2.datasets.miscfx.Dataset method)
(mvpa2.datasets.mri.Dataset method)
(mvpa2.datasets.niml.Dataset method)
(mvpa2.mappers.filters.Dataset method)
(mvpa2.mappers.fx.Dataset method)
(mvpa2.mappers.fxy.Dataset method)
(mvpa2.mappers.glm.Dataset method)
(mvpa2.mappers.shape.Dataset method)
(mvpa2.mappers.zscore.Dataset method)
(mvpa2.measures.anova.Dataset method)
(mvpa2.measures.base.Dataset method)
(mvpa2.measures.corrcoef.Dataset method)
(mvpa2.measures.irelief.Dataset method)
(mvpa2.measures.noiseperturbation.Dataset method)
(mvpa2.measures.rsa.Dataset method)
(mvpa2.measures.searchlight.Dataset method)
(mvpa2.measures.statsmodels_adaptor.Dataset method)
(mvpa2.measures.winner.Dataset method)
(mvpa2.misc.data_generators.Dataset method)
(mvpa2.misc.plot.flat_surf.Dataset method)
(mvpa2.testing.clfs.Dataset method)
(mvpa2.testing.datasets.Dataset method)
find_events() (in module mvpa2.datasets.eventrelated)
find_file() (in module mvpa2.support.nibabel.afni_suma_spec)
find_surface_from_state() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
first_axis_mean() (in module mvpa2.clfs.meta)
(in module mvpa2.misc.transformers)
first_axis_sum_not_zero() (in module mvpa2.misc.transformers)
fit() (mvpa2.clfs.stats.AdaptiveNullDist method)
(mvpa2.clfs.stats.FixedNullDist method)
(mvpa2.clfs.stats.MCNullDist method)
(mvpa2.clfs.stats.Nonparametric static method)
(mvpa2.clfs.stats.NullDist method)
(mvpa2.clfs.stats.rv_semifrozen method)
fit2histogram() (in module mvpa2.misc.fx)
fit_event_hrf_model() (in module mvpa2.datasets.eventrelated)
FixedErrorThresholdStopCrit (class in mvpa2.featsel.helpers)
FixedNElementTailSelector (class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.featsel.helpers)
(class in mvpa2.featsel.ifs)
FixedNullDist (class in mvpa2.clfs.stats)
flat_surface2grid_mask() (in module mvpa2.misc.plot.flat_surf)
flat_surface2xy() (in module mvpa2.misc.plot.flat_surf)
flat_surface_curvature2rgba() (in module mvpa2.misc.plot.flat_surf)
flat_surface_data2rgba() (in module mvpa2.misc.plot.flat_surf)
FlatSurfacePlotter (class in mvpa2.misc.plot.flat_surf)
FlattenMapper (class in mvpa2.algorithms.benchmarks.hyperalignment)
(class in mvpa2.datasets.base)
(class in mvpa2.datasets.cosmo)
(class in mvpa2.datasets.eeglab)
(class in mvpa2.datasets.eventrelated)
(class in mvpa2.datasets.mri)
(class in mvpa2.mappers.flatten)
floor() (in module mvpa2.featsel.helpers)
flowbreak() (mvpa2.base.report.Report method)
flush() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
fmeasure (mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
fMRI
fmri_dataset() (in module mvpa2.datasets.mri)
force_train (mvpa2.algorithms.group_clusterthr.Learner attribute)
(mvpa2.base.learner.Learner attribute)
(mvpa2.clfs.base.Learner attribute)
(mvpa2.mappers.base.Learner attribute)
(mvpa2.mappers.skl_adaptor.Learner attribute)
(mvpa2.measures.base.Learner attribute)
format() (mvpa2.clfs.lars.BibTeX method)
(mvpa2.featsel.rfe.BibTeX method)
format_epilog() (mvpa2.misc.cmdline.OptionParser method)
format_help() (mvpa2.misc.cmdline.OptionGroup method)
(mvpa2.misc.cmdline.OptionParser method)
format_option_help() (mvpa2.misc.cmdline.OptionParser method)
forward() (mvpa2.algorithms.hyperalignment.ChainMapper method)
(mvpa2.datasets.base.ChainMapper method)
(mvpa2.datasets.cosmo.ChainMapper method)
(mvpa2.mappers.base.ChainMapper method)
(mvpa2.mappers.base.Mapper method)
(mvpa2.mappers.boxcar.Mapper method)
(mvpa2.mappers.detrend.Mapper method)
(mvpa2.mappers.filters.Mapper method)
(mvpa2.mappers.flatten.ChainMapper method)
(mvpa2.mappers.flatten.Mapper method)
(mvpa2.mappers.fx.Mapper method)
(mvpa2.mappers.fxy.Mapper method)
(mvpa2.mappers.glm.Mapper method)
(mvpa2.mappers.mdp_adaptor.Mapper method)
(mvpa2.mappers.projection.Mapper method)
(mvpa2.mappers.shape.Mapper method)
(mvpa2.mappers.skl_adaptor.Mapper method)
(mvpa2.mappers.slicing.Mapper method)
(mvpa2.mappers.som.Mapper method)
(mvpa2.mappers.wavelet.Mapper method)
(mvpa2.mappers.zscore.Mapper method)
(mvpa2.measures.searchlight.ChainMapper method)
(mvpa2.misc.surfing.volgeom.ChainMapper method)
forward1() (mvpa2.algorithms.benchmarks.hyperalignment.BoxcarMapper method)
(mvpa2.algorithms.benchmarks.hyperalignment.IdentityMapper method)
(mvpa2.algorithms.group_clusterthr.IdentityMapper method)
(mvpa2.algorithms.hyperalignment.ChainMapper method)
(mvpa2.datasets.base.ChainMapper method)
(mvpa2.datasets.cosmo.ChainMapper method)
(mvpa2.datasets.eventrelated.BoxcarMapper method)
(mvpa2.mappers.base.ChainMapper method)
(mvpa2.mappers.base.IdentityMapper method)
(mvpa2.mappers.base.Mapper method)
(mvpa2.mappers.boxcar.BoxcarMapper method)
(mvpa2.mappers.boxcar.Mapper method)
(mvpa2.mappers.detrend.Mapper method)
(mvpa2.mappers.filters.Mapper method)
(mvpa2.mappers.flatten.ChainMapper method)
(mvpa2.mappers.flatten.Mapper method)
(mvpa2.mappers.fx.Mapper method)
(mvpa2.mappers.fxy.Mapper method)
(mvpa2.mappers.glm.Mapper method)
(mvpa2.mappers.mdp_adaptor.Mapper method)
(mvpa2.mappers.projection.Mapper method)
(mvpa2.mappers.shape.Mapper method)
(mvpa2.mappers.skl_adaptor.Mapper method)
(mvpa2.mappers.slicing.Mapper method)
(mvpa2.mappers.som.Mapper method)
(mvpa2.mappers.wavelet.Mapper method)
(mvpa2.mappers.zscore.Mapper method)
(mvpa2.measures.searchlight.ChainMapper method)
(mvpa2.misc.plot.erp.BoxcarMapper method)
(mvpa2.misc.surfing.volgeom.ChainMapper method)
FractionTailSelector (class in mvpa2.clfs.warehouse)
(class in mvpa2.featsel.base)
(class in mvpa2.featsel.helpers)
(class in mvpa2.featsel.rfe)
free software
free_feature_matrix() (mvpa2.kernels.sg.RealFeatures method)
free_features() (mvpa2.kernels.sg.RealFeatures method)
friedmanchisquare() (in module mvpa2.clfs.transerror)
from_any() (in module mvpa2.datasets.cosmo)
(in module mvpa2.datasets.niml)
(in module mvpa2.misc.surfing.surf_voxel_selection)
(in module mvpa2.misc.surfing.volgeom)
(in module mvpa2.misc.surfing.volume_mask_dict)
(in module mvpa2.support.nibabel.afni_niml_dset)
(in module mvpa2.support.nibabel.afni_niml_roi)
(in module mvpa2.support.nibabel.afni_suma_1d)
(in module mvpa2.support.nibabel.afni_suma_spec)
(in module mvpa2.support.nibabel.surf)
from_channeltimeseries() (mvpa2.algorithms.group_clusterthr.Dataset class method)
(mvpa2.algorithms.hyperalignment.Dataset class method)
(mvpa2.clfs.base.Dataset class method)
(mvpa2.clfs.glmnet.Dataset class method)
(mvpa2.clfs.gpr.Dataset class method)
(mvpa2.clfs.knn.Dataset class method)
(mvpa2.clfs.lars.Dataset class method)
(mvpa2.clfs.meta.Dataset class method)
(mvpa2.clfs.plr.Dataset class method)
(mvpa2.clfs.smlr.Dataset class method)
(mvpa2.clfs.stats.Dataset class method)
(mvpa2.clfs.transerror.Dataset class method)
(mvpa2.datasets.base.Dataset class method)
(mvpa2.datasets.cosmo.Dataset class method)
(mvpa2.datasets.eeglab.Dataset class method)
(mvpa2.datasets.eep.Dataset class method)
(mvpa2.datasets.eventrelated.Dataset class method)
(mvpa2.datasets.formats.Dataset class method)
(mvpa2.datasets.gifti.Dataset class method)
(mvpa2.datasets.miscfx.Dataset class method)
(mvpa2.datasets.mri.Dataset class method)
(mvpa2.datasets.niml.Dataset class method)
(mvpa2.mappers.filters.Dataset class method)
(mvpa2.mappers.fx.Dataset class method)
(mvpa2.mappers.fxy.Dataset class method)
(mvpa2.mappers.glm.Dataset class method)
(mvpa2.mappers.shape.Dataset class method)
(mvpa2.mappers.zscore.Dataset class method)
(mvpa2.measures.anova.Dataset class method)
(mvpa2.measures.base.Dataset class method)
(mvpa2.measures.corrcoef.Dataset class method)
(mvpa2.measures.irelief.Dataset class method)
(mvpa2.measures.noiseperturbation.Dataset class method)
(mvpa2.measures.rsa.Dataset class method)
(mvpa2.measures.searchlight.Dataset class method)
(mvpa2.measures.statsmodels_adaptor.Dataset class method)
(mvpa2.measures.winner.Dataset class method)
(mvpa2.misc.data_generators.Dataset class method)
(mvpa2.misc.plot.flat_surf.Dataset class method)
(mvpa2.testing.clfs.Dataset class method)
(mvpa2.testing.datasets.Dataset class method)
from_file_map() (mvpa2.misc.plot.lightbox.SpatialImage class method)
from_filename() (mvpa2.misc.plot.lightbox.SpatialImage class method)
from_files() (mvpa2.misc.plot.lightbox.SpatialImage class method)
from_filespec() (mvpa2.misc.plot.lightbox.SpatialImage class method)
from_hdf5() (mvpa2.base.dataset.AttrDataset class method)
(mvpa2.base.learner.AttrDataset class method)
(mvpa2.datasets.base.AttrDataset class method)
(mvpa2.datasets.gifti.AttrDataset class method)
(mvpa2.featsel.helpers.AttrDataset class method)
(mvpa2.measures.base.AttrDataset class method)
(mvpa2.misc.surfing.queryengine.AttrDataset class method)
from_image() (mvpa2.misc.plot.lightbox.SpatialImage class method)
from_lightsvm_format() (in module mvpa2.datasets.formats)
from_mat() (mvpa2.datasets.cosmo.CosmoQueryEngine class method)
from_niml() (in module mvpa2.datasets.niml)
from_npz() (mvpa2.base.dataset.AttrDataset class method)
(mvpa2.base.learner.AttrDataset class method)
(mvpa2.datasets.base.AttrDataset class method)
(mvpa2.datasets.gifti.AttrDataset class method)
(mvpa2.featsel.helpers.AttrDataset class method)
(mvpa2.measures.base.AttrDataset class method)
(mvpa2.misc.surfing.queryengine.AttrDataset class method)
from_volume() (in module mvpa2.misc.surfing.volsurf)
from_wizard() (mvpa2.algorithms.group_clusterthr.Dataset class method)
(mvpa2.algorithms.hyperalignment.Dataset class method)
(mvpa2.clfs.base.Dataset class method)
(mvpa2.clfs.glmnet.Dataset class method)
(mvpa2.clfs.gpr.Dataset class method)
(mvpa2.clfs.knn.Dataset class method)
(mvpa2.clfs.lars.Dataset class method)
(mvpa2.clfs.meta.Dataset class method)
(mvpa2.clfs.plr.Dataset class method)
(mvpa2.clfs.smlr.Dataset class method)
(mvpa2.clfs.stats.Dataset class method)
(mvpa2.clfs.transerror.Dataset class method)
(mvpa2.datasets.base.Dataset class method)
(mvpa2.datasets.cosmo.Dataset class method)
(mvpa2.datasets.eeglab.Dataset class method)
(mvpa2.datasets.eep.Dataset class method)
(mvpa2.datasets.eventrelated.Dataset class method)
(mvpa2.datasets.formats.Dataset class method)
(mvpa2.datasets.gifti.Dataset class method)
(mvpa2.datasets.miscfx.Dataset class method)
(mvpa2.datasets.mri.Dataset class method)
(mvpa2.datasets.niml.Dataset class method)
(mvpa2.mappers.filters.Dataset class method)
(mvpa2.mappers.fx.Dataset class method)
(mvpa2.mappers.fxy.Dataset class method)
(mvpa2.mappers.glm.Dataset class method)
(mvpa2.mappers.shape.Dataset class method)
(mvpa2.mappers.zscore.Dataset class method)
(mvpa2.measures.anova.Dataset class method)
(mvpa2.measures.base.Dataset class method)
(mvpa2.measures.corrcoef.Dataset class method)
(mvpa2.measures.irelief.Dataset class method)
(mvpa2.measures.noiseperturbation.Dataset class method)
(mvpa2.measures.rsa.Dataset class method)
(mvpa2.measures.searchlight.Dataset class method)
(mvpa2.measures.statsmodels_adaptor.Dataset class method)
(mvpa2.measures.winner.Dataset class method)
(mvpa2.misc.data_generators.Dataset class method)
(mvpa2.misc.plot.flat_surf.Dataset class method)
(mvpa2.testing.clfs.Dataset class method)
(mvpa2.testing.datasets.Dataset class method)
from_xml() (mvpa2.atlases.base.Label static method)
(mvpa2.atlases.base.LabelsLevel static method)
(mvpa2.atlases.base.Level static method)
(mvpa2.atlases.base.ReferencesLevel static method)
(mvpa2.atlases.fsl.LabelsLevel static method)
(mvpa2.atlases.warehouse.Label static method)
(mvpa2.atlases.warehouse.LabelsLevel static method)
(mvpa2.atlases.warehouse.Level static method)
(mvpa2.atlases.warehouse.ReferencesLevel static method)
frombuffer() (mvpa2.kernels.sg.RealFeatures method)
fromkeys() (mvpa2.algorithms.group_clusterthr.Counter class method)
fromtimestamp() (mvpa2.base.report.datetime method)
fselector (mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
FSL, [1]
FSLAtlas (class in mvpa2.atlases.fsl)
(class in mvpa2.atlases.warehouse)
FslEV3 (class in mvpa2.misc.fsl)
(class in mvpa2.misc.fsl.base)
FslGLMDesign (class in mvpa2.misc.fsl)
(class in mvpa2.misc.fsl.base)
FSLLabelsAtlas (class in mvpa2.atlases.fsl)
(class in mvpa2.atlases.warehouse)
FSLProbabilisticAtlas (class in mvpa2.atlases)
(class in mvpa2.atlases.fsl)
(class in mvpa2.atlases.warehouse)
func (mvpa2.measures.winner.partial attribute)
fx (mvpa2.mappers.fx.FxMapper attribute)
(mvpa2.mappers.fxy.FxyMapper attribute)
fxargs (mvpa2.mappers.fx.FxMapper attribute)
FxMapper (class in mvpa2.mappers.fx)
FxyMapper (class in mvpa2.mappers.fxy)

G

GDA (class in mvpa2.clfs.gda)
Generalization
GeneralizedLinearKernel (class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.np)
generate() (mvpa2.algorithms.benchmarks.hyperalignment.Splitter method)
(mvpa2.base.learner.CompoundNode method)
(mvpa2.base.learner.Node method)
(mvpa2.base.node.CompoundNode method)
(mvpa2.base.node.Node method)
(mvpa2.clfs.meta.Splitter method)
(mvpa2.clfs.stats.AttributePermutator method)
(mvpa2.clfs.transerror.Node method)
(mvpa2.featsel.rfe.Repeater method)
(mvpa2.featsel.rfe.Splitter method)
(mvpa2.generators.base.Node method)
(mvpa2.generators.base.Repeater method)
(mvpa2.generators.base.Sifter method)
(mvpa2.generators.partition.ExcludeTargetsCombinationsPartitioner method)
(mvpa2.generators.partition.FactorialPartitioner method)
(mvpa2.generators.partition.Node method)
(mvpa2.generators.partition.Partitioner method)
(mvpa2.generators.permutation.AttributePermutator method)
(mvpa2.generators.permutation.Node method)
(mvpa2.generators.resampling.Balancer method)
(mvpa2.generators.resampling.Node method)
(mvpa2.generators.splitters.Node method)
(mvpa2.generators.splitters.Splitter method)
(mvpa2.mappers.filters.Splitter method)
(mvpa2.mappers.fx.Node method)
(mvpa2.mappers.slicing.Node method)
(mvpa2.measures.base.Node method)
(mvpa2.measures.base.Splitter method)
(mvpa2.misc.plot.Splitter method)
(mvpa2.misc.plot.base.Splitter method)
(mvpa2.viz.Splitter method)
generate_bar() (in module mvpa2.support.nibabel.surf)
generate_cube() (in module mvpa2.support.nibabel.surf)
generate_plane() (in module mvpa2.support.nibabel.surf)
generate_sphere() (in module mvpa2.support.nibabel.surf)
generate_testing_datasets() (in module mvpa2.testing.datasets)
generator (mvpa2.measures.base.RepeatedMeasure attribute)
(mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute)
(mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute)
get() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.base.ConfigManager method)
(mvpa2.base.config.ConfigManager method)
(mvpa2.misc.surfing.volume_mask_dict.Mapping method)
(mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_affine() (mvpa2.misc.plot.lightbox.SpatialImage method)
get_anatomy_image() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_as_dtype() (mvpa2.base.config.ConfigManager method)
(mvpa2.base.ConfigManager method)
get_attr() (mvpa2.algorithms.group_clusterthr.Dataset method)
(mvpa2.algorithms.hyperalignment.Dataset method)
(mvpa2.clfs.base.Dataset method)
(mvpa2.clfs.glmnet.Dataset method)
(mvpa2.clfs.gpr.Dataset method)
(mvpa2.clfs.knn.Dataset method)
(mvpa2.clfs.lars.Dataset method)
(mvpa2.clfs.meta.Dataset method)
(mvpa2.clfs.plr.Dataset method)
(mvpa2.clfs.smlr.Dataset method)
(mvpa2.clfs.stats.Dataset method)
(mvpa2.clfs.transerror.Dataset method)
(mvpa2.datasets.base.Dataset method)
(mvpa2.datasets.cosmo.Dataset method)
(mvpa2.datasets.eeglab.Dataset method)
(mvpa2.datasets.eep.Dataset method)
(mvpa2.datasets.eventrelated.Dataset method)
(mvpa2.datasets.formats.Dataset method)
(mvpa2.datasets.gifti.Dataset method)
(mvpa2.datasets.miscfx.Dataset method)
(mvpa2.datasets.mri.Dataset method)
(mvpa2.datasets.niml.Dataset method)
(mvpa2.mappers.filters.Dataset method)
(mvpa2.mappers.fx.Dataset method)
(mvpa2.mappers.fxy.Dataset method)
(mvpa2.mappers.glm.Dataset method)
(mvpa2.mappers.shape.Dataset method)
(mvpa2.mappers.zscore.Dataset method)
(mvpa2.measures.anova.Dataset method)
(mvpa2.measures.base.Dataset method)
(mvpa2.measures.corrcoef.Dataset method)
(mvpa2.measures.irelief.Dataset method)
(mvpa2.measures.noiseperturbation.Dataset method)
(mvpa2.measures.rsa.Dataset method)
(mvpa2.measures.searchlight.Dataset method)
(mvpa2.measures.statsmodels_adaptor.Dataset method)
(mvpa2.measures.winner.Dataset method)
(mvpa2.misc.data_generators.Dataset method)
(mvpa2.misc.plot.flat_surf.Dataset method)
(mvpa2.testing.clfs.Dataset method)
(mvpa2.testing.datasets.Dataset method)
get_aux() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_bold_run_dataset() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_bold_run_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_bold_run_image() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_bold_run_model() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_bold_run_motion_estimates() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_break_points() (in module mvpa2.misc.support)
get_by_descr() (mvpa2.clfs.warehouse.Warehouse method)
get_cluster_pvals() (in module mvpa2.algorithms.group_clusterthr)
get_cluster_sizes() (in module mvpa2.algorithms.group_clusterthr)
get_data() (mvpa2.misc.plot.lightbox.SpatialImage method)
get_data_dtype() (mvpa2.misc.plot.lightbox.SpatialImage method)
get_dataset_feature_mask() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_default_values() (mvpa2.misc.cmdline.OptionParser method)
get_description() (mvpa2.misc.cmdline.OptionParser method)
get_docstring_split() (in module mvpa2.base.dochelpers)
(in module mvpa2.base.state)
get_empty_array() (mvpa2.misc.surfing.volgeom.VolGeom method)
get_empty_nifti_image() (mvpa2.misc.surfing.volgeom.VolGeom method)
get_ev() (mvpa2.misc.fsl.base.FslEV3 method)
(mvpa2.misc.fsl.FslEV3 method)
get_feature_matrix() (mvpa2.kernels.sg.RealFeatures method)
get_feature_vector() (mvpa2.kernels.sg.RealFeatures method)
get_filename() (mvpa2.misc.plot.lightbox.SpatialImage method)
get_header() (mvpa2.misc.plot.lightbox.SpatialImage method)
get_labels_map() (mvpa2.clfs.base.ConfusionMatrix method)
(mvpa2.clfs.transerror.ConfusionMatrix method)
get_limit_filter() (in module mvpa2.generators.permutation)
(in module mvpa2.generators.resampling)
(in module mvpa2.misc.support)
get_map() (mvpa2.atlases.fsl.FSLProbabilisticAtlas method)
(mvpa2.atlases.FSLProbabilisticAtlas method)
(mvpa2.atlases.warehouse.FSLProbabilisticAtlas method)
get_mapped() (mvpa2.algorithms.group_clusterthr.Dataset method)
(mvpa2.algorithms.hyperalignment.Dataset method)
(mvpa2.clfs.base.Dataset method)
(mvpa2.clfs.glmnet.Dataset method)
(mvpa2.clfs.gpr.Dataset method)
(mvpa2.clfs.knn.Dataset method)
(mvpa2.clfs.lars.Dataset method)
(mvpa2.clfs.meta.Dataset method)
(mvpa2.clfs.plr.Dataset method)
(mvpa2.clfs.smlr.Dataset method)
(mvpa2.clfs.stats.Dataset method)
(mvpa2.clfs.transerror.Dataset method)
(mvpa2.datasets.base.Dataset method)
(mvpa2.datasets.cosmo.Dataset method)
(mvpa2.datasets.eeglab.Dataset method)
(mvpa2.datasets.eep.Dataset method)
(mvpa2.datasets.eventrelated.Dataset method)
(mvpa2.datasets.formats.Dataset method)
(mvpa2.datasets.gifti.Dataset method)
(mvpa2.datasets.miscfx.Dataset method)
(mvpa2.datasets.mri.Dataset method)
(mvpa2.datasets.niml.Dataset method)
(mvpa2.mappers.filters.Dataset method)
(mvpa2.mappers.fx.Dataset method)
(mvpa2.mappers.fxy.Dataset method)
(mvpa2.mappers.glm.Dataset method)
(mvpa2.mappers.shape.Dataset method)
(mvpa2.mappers.zscore.Dataset method)
(mvpa2.measures.anova.Dataset method)
(mvpa2.measures.base.Dataset method)
(mvpa2.measures.corrcoef.Dataset method)
(mvpa2.measures.irelief.Dataset method)
(mvpa2.measures.noiseperturbation.Dataset method)
(mvpa2.measures.rsa.Dataset method)
(mvpa2.measures.searchlight.Dataset method)
(mvpa2.measures.statsmodels_adaptor.Dataset method)
(mvpa2.measures.winner.Dataset method)
(mvpa2.misc.data_generators.Dataset method)
(mvpa2.misc.plot.flat_surf.Dataset method)
(mvpa2.testing.clfs.Dataset method)
(mvpa2.testing.datasets.Dataset method)
get_maps() (mvpa2.atlases.fsl.FSLProbabilisticAtlas method)
(mvpa2.atlases.FSLProbabilisticAtlas method)
(mvpa2.atlases.warehouse.FSLProbabilisticAtlas method)
get_mask() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_masked_array() (mvpa2.misc.surfing.volgeom.VolGeom method)
get_masked_nifti_image() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method)
(mvpa2.misc.surfing.volgeom.VolGeom method)
get_minimal_dataset() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_model_bold_dataset() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_model_conditions() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_model_contrasts() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_model_descriptions() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_model_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_mv_pattern() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
get_nelements_per_value() (in module mvpa2.datasets.miscfx)
(in module mvpa2.generators.resampling)
(in module mvpa2.misc.support)
get_nifti_image_mask() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_node2voxels_mapping() (mvpa2.misc.surfing.volsurf.VolSurfMapping method)
(mvpa2.misc.surfing.volsurf.VolSurfMaximalMapping method)
(mvpa2.misc.surfing.volsurf.VolSurfMinimalLowresMapping method)
(mvpa2.misc.surfing.volsurf.VolSurfMinimalMapping method)
get_nsamples_per_attr() (in module mvpa2.datasets.miscfx)
(in module mvpa2.mappers.zscore)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
get_num_features() (mvpa2.kernels.sg.RealFeatures method)
get_opt_string() (mvpa2.misc.cmdline.Option method)
get_option_group() (mvpa2.misc.cmdline.OptionParser method)
get_parameter_dict() (mvpa2.misc.surfing.volsurf.VolSurfMapping method)
get_partition_specs() (mvpa2.generators.partition.Partitioner method)
get_partitions_attr() (mvpa2.generators.partition.Partitioner method)
get_postproc() (mvpa2.base.learner.Node method)
(mvpa2.base.node.Node method)
(mvpa2.clfs.transerror.Node method)
(mvpa2.generators.base.Node method)
(mvpa2.generators.partition.Node method)
(mvpa2.generators.permutation.Node method)
(mvpa2.generators.resampling.Node method)
(mvpa2.generators.splitters.Node method)
(mvpa2.mappers.fx.Node method)
(mvpa2.mappers.slicing.Node method)
(mvpa2.measures.base.Node method)
get_probmap() (mvpa2.misc.fsl.melodic.MelodicResults method)
get_prog_name() (mvpa2.misc.cmdline.OptionParser method)
get_pymvpa_gitversion() (in module mvpa2.base.info)
get_random_rotation() (in module mvpa2.misc.data_generators)
(in module mvpa2.misc.fx)
(in module mvpa2.testing.datasets)
get_random_seed() (in module mvpa2)
get_raw_tmodes() (mvpa2.misc.fsl.melodic.MelodicResults method)
get_rng() (in module mvpa2.generators.permutation)
(in module mvpa2.generators.resampling)
(in module mvpa2.misc.support)
get_samples_by_attr() (in module mvpa2.clfs.meta)
(in module mvpa2.datasets.miscfx)
(in module mvpa2.mappers.zscore)
(in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
get_samples_per_chunk_target() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
get_scan_properties() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_selected_indexes() (mvpa2.generators.partition.Partitioner method)
get_sensitivity_analyzer() (mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.enet.ENET method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.gpr.GPR method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.lars.LARS method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.BoostedClassifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.meta.ProxyClassifier method)
(mvpa2.clfs.meta.SplitClassifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.plr.PLR method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.clfs.smlr.SMLR method)
(mvpa2.clfs.warehouse.GPR method)
(mvpa2.clfs.warehouse.LARS method)
(mvpa2.clfs.warehouse.PLR method)
(mvpa2.clfs.warehouse.SMLR method)
(mvpa2.clfs.warehouse.SplitClassifier method)
(mvpa2.featsel.rfe.ProxyClassifier method)
(mvpa2.testing.clfs.Classifier method)
(mvpa2.testing.clfs.SMLR method)
get_shape() (mvpa2.misc.plot.lightbox.SpatialImage method)
get_space() (mvpa2.base.learner.Node method)
(mvpa2.base.node.Node method)
(mvpa2.clfs.transerror.Node method)
(mvpa2.generators.base.Node method)
(mvpa2.generators.partition.Node method)
(mvpa2.generators.permutation.Node method)
(mvpa2.generators.resampling.Node method)
(mvpa2.generators.splitters.Node method)
(mvpa2.mappers.fx.Node method)
(mvpa2.mappers.slicing.Node method)
(mvpa2.measures.base.Node method)
get_sphere_left_right_mapping() (in module mvpa2.support.nibabel.surf)
get_subj_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_surface() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
get_surface_file() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
get_targets() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_task_bold_attributes() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_task_bold_run_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_task_descriptions() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method)
(mvpa2.datasets.sources.OpenFMRIDataset method)
get_thresh_zstat() (mvpa2.misc.fsl.melodic.MelodicResults method)
get_thresholding_map() (in module mvpa2.algorithms.group_clusterthr)
get_tmodes() (mvpa2.misc.fsl.melodic.MelodicResults method)
get_transposed() (mvpa2.kernels.sg.RealFeatures method)
get_tuple_list() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_tuple_list_dict() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
get_usage() (mvpa2.misc.cmdline.OptionParser method)
get_version() (mvpa2.misc.cmdline.OptionParser method)
get_vmem() (in module mvpa2.base.verbosity)
get_vmem_from_status() (in module mvpa2.base.verbosity)
get_vmem_str() (in module mvpa2.base.verbosity)
get_voxel_indices() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
getboolean() (mvpa2.base.config.ConfigManager method)
(mvpa2.base.ConfigManager method)
getcol() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method)
getnewidcode() (in module mvpa2.support.nibabel.afni_niml)
getnnz() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
getpid() (in module mvpa2.base.verbosity)
getrow() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method)
getvalue() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
gifti_dataset() (in module mvpa2.datasets.gifti)
Git, [1]
Git repository
GLM (class in mvpa2.measures.statsmodels_adaptor)
GLMMapper (class in mvpa2.mappers.glm)
GLMNET_C (class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.warehouse)
GLMNET_R (class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.warehouse)
GLMNETWeights (class in mvpa2.clfs.glmnet)
GNB (class in mvpa2.clfs.gnb)
(class in mvpa2.clfs.warehouse)
gnb (mvpa2.measures.gnbsearchlight.GNBSearchlight attribute)
GNBSearchlight (class in mvpa2.measures.gnbsearchlight)
GPR, [1]
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.warehouse)
GPRLinearWeights (class in mvpa2.clfs.gpr)
GPRWeights (class in mvpa2.clfs.gpr)
gradient() (mvpa2.kernels.np.ExponentialKernel method)
(mvpa2.kernels.np.Matern_3_2Kernel method)
(mvpa2.kernels.np.RationalQuadraticKernel method)
(mvpa2.measures.irelief.ExponentialKernel method)
grand_mean() (in module mvpa2.misc.transformers)
griddata() (in module mvpa2.misc.plot.flat_surf)
(in module mvpa2.misc.plot.topo)
group_kwargs() (in module mvpa2.clfs.meta)
(in module mvpa2.measures.base)
(in module mvpa2.misc.args)
group_sample_loser_measure() (in module mvpa2.measures.winner)
group_sample_winner_measure() (in module mvpa2.measures.winner)
GroupClusterThreshold (class in mvpa2.algorithms.group_clusterthr)

H

h5load() (in module mvpa2.algorithms.searchlight_hyperalignment)
(in module mvpa2.base.hdf5)
(in module mvpa2.datasets.niml)
(in module mvpa2.measures.searchlight)
(in module mvpa2.misc.surfing.surf_voxel_selection)
(in module mvpa2.misc.surfing.volume_mask_dict)
h5save() (in module mvpa2.algorithms.searchlight_hyperalignment)
(in module mvpa2.base.hdf5)
(in module mvpa2.datasets.niml)
(in module mvpa2.measures.searchlight)
(in module mvpa2.misc.surfing.surf_voxel_selection)
(in module mvpa2.misc.surfing.volume_mask_dict)
HalfPartitioner (class in mvpa2.algorithms.benchmarks.hyperalignment)
(class in mvpa2.generators.partition)
handle_docstring() (in module mvpa2.base.dochelpers)
handlers (mvpa2.base.verbosity.Logger attribute)
hdf2obj() (in module mvpa2.base.hdf5)
header (mvpa2.misc.plot.lightbox.SpatialImage attribute)
header_class (mvpa2.misc.plot.lightbox.SpatialImage attribute)
header_def (mvpa2.misc.fsl.base.McFlirtParams attribute)
(mvpa2.misc.fsl.McFlirtParams attribute)
hemi_pairs_add_views() (in module mvpa2.support.nibabel.afni_suma_spec)
hist() (in module mvpa2.viz)
history
hlcuster
HollowSamples (class in mvpa2.datasets.base)
(class in mvpa2.testing.datasets)
HollowSphere (class in mvpa2.misc.neighborhood)
hour (mvpa2.base.report.datetime attribute)
hstack() (in module mvpa2.base.dataset)
(in module mvpa2.datasets.niml)
(in module mvpa2.measures.base)
(in module mvpa2.measures.searchlight)
hyperalignment
Hyperalignment (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)

I

ic (mvpa2.misc.fsl.melodic.MelodicResults attribute)
ICAMapper (class in mvpa2.mappers.mdp_adaptor)
icstats (mvpa2.misc.fsl.melodic.MelodicResults attribute)
Identity() (in module mvpa2.misc.transformers)
IdentityMapper (class in mvpa2.algorithms.benchmarks.hyperalignment)
(class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.mappers.base)
IdentityNeighborhood (class in mvpa2.misc.neighborhood)
idhash (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
idhash() (in module mvpa2.clfs.base)
(in module mvpa2.misc.support)
idhash_() (in module mvpa2.datasets.base)
(in module mvpa2.misc.neighborhood)
ids (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine attribute)
(mvpa2.datasets.cosmo.CosmoQueryEngine attribute)
(mvpa2.misc.neighborhood.QueryEngine attribute)
(mvpa2.misc.surfing.queryengine.SurfaceQueryEngine attribute)
(mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine attribute)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine attribute)
(mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine attribute)
IFS (class in mvpa2.featsel.ifs)
iir_filter() (in module mvpa2.mappers.filters)
IIRFilterMapper (class in mvpa2.mappers.filters)
ijk2lin() (mvpa2.misc.surfing.volgeom.VolGeom method)
ijk2triples() (mvpa2.misc.surfing.volgeom.VolGeom method)
ijk2xyz() (mvpa2.misc.surfing.volgeom.VolGeom method)
in_memory (mvpa2.misc.plot.lightbox.SpatialImage attribute)
indent (mvpa2.base.LevelLogger attribute)
(mvpa2.base.verbosity.LevelLogger attribute)
indent_doc() (in module mvpa2.clfs.knn)
(in module mvpa2.misc.support)
index (mvpa2.atlases.base.Label attribute)
(mvpa2.atlases.base.LabelsLevel attribute)
(mvpa2.atlases.fsl.LabelsLevel attribute)
(mvpa2.atlases.warehouse.Label attribute)
(mvpa2.atlases.warehouse.LabelsLevel attribute)
IndexedCollectable (class in mvpa2.base.attributes)
(class in mvpa2.base.param)
(class in mvpa2.base.state)
indexes (mvpa2.atlases.base.ReferencesLevel attribute)
(mvpa2.atlases.warehouse.ReferencesLevel attribute)
IndexQueryEngine (class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.measures.gnbsearchlight)
(class in mvpa2.measures.nnsearchlight)
(class in mvpa2.measures.searchlight)
(class in mvpa2.misc.data_generators)
(class in mvpa2.misc.neighborhood)
(class in mvpa2.testing.datasets)
indexsum (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute)
(mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute)
info
init_origids() (mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
initialize_cache() (mvpa2.kernels.sg.RealFeatures method)
inner_radius (mvpa2.misc.neighborhood.HollowSphere attribute)
installation
instance_to_filename() (mvpa2.misc.plot.lightbox.SpatialImage class method)
intensities (mvpa2.misc.fsl.base.FslEV3 attribute)
(mvpa2.misc.fsl.FslEV3 attribute)
intermediate_surface (mvpa2.misc.surfing.volsurf.VolSurf attribute)
internals (mvpa2.clfs.warehouse.Warehouse attribute)
introduction
invariant features
inverse_cmap() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
IPython
is_active() (mvpa2.base.state.ConditionalAttributesCollection method)
is_datasetlike() (in module mvpa2.algorithms.searchlight_hyperalignment)
(in module mvpa2.base.dataset)
(in module mvpa2.base.learner)
(in module mvpa2.base.types)
(in module mvpa2.clfs.base)
(in module mvpa2.clfs.stats)
(in module mvpa2.kernels.base)
(in module mvpa2.mappers.base)
(in module mvpa2.mappers.procrustean)
(in module mvpa2.measures.searchlight)
(in module mvpa2.viz)
is_default (mvpa2.algorithms.group_clusterthr.Parameter attribute)
(mvpa2.algorithms.hyperalignment.Parameter attribute)
(mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute)
(mvpa2.base.param.Parameter attribute)
(mvpa2.clfs.base.Parameter attribute)
(mvpa2.clfs.gda.Parameter attribute)
(mvpa2.clfs.glmnet.Parameter attribute)
(mvpa2.clfs.gnb.Parameter attribute)
(mvpa2.clfs.gpr.Parameter attribute)
(mvpa2.clfs.meta.Parameter attribute)
(mvpa2.clfs.smlr.Parameter attribute)
(mvpa2.kernels.base.Parameter attribute)
(mvpa2.kernels.libsvm.Parameter attribute)
(mvpa2.kernels.np.Parameter attribute)
(mvpa2.kernels.sg.Parameter attribute)
(mvpa2.mappers.detrend.Parameter attribute)
(mvpa2.mappers.filters.Parameter attribute)
(mvpa2.mappers.fx.Parameter attribute)
(mvpa2.mappers.glm.Parameter attribute)
(mvpa2.mappers.procrustean.Parameter attribute)
(mvpa2.measures.rsa.Parameter attribute)
is_enabled() (mvpa2.base.state.ConditionalAttributesCollection method)
is_equal() (mvpa2.kernels.sg.RealFeatures method)
is_in_volume() (in module mvpa2.mappers.flatten)
(in module mvpa2.mappers.mdp_adaptor)
(in module mvpa2.misc.support)
is_same_layout() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
is_sequence_type() (in module mvpa2.base.collections)
(in module mvpa2.base.state)
(in module mvpa2.base.types)
(in module mvpa2.clfs.meta)
(in module mvpa2.clfs.warehouse)
(in module mvpa2.datasets.miscfx)
(in module mvpa2.mappers.detrend)
(in module mvpa2.misc.attrmap)
(in module mvpa2.misc.neighborhood)
(in module mvpa2.misc.support)
is_set (mvpa2.base.attributes.IndexedCollectable attribute)
(mvpa2.base.param.IndexedCollectable attribute)
(mvpa2.base.state.IndexedCollectable attribute)
is_set() (mvpa2.base.state.Collection method)
is_sorted() (in module mvpa2.misc.support)
is_trained (mvpa2.algorithms.group_clusterthr.Learner attribute)
(mvpa2.base.learner.CompoundLearner attribute)
(mvpa2.base.learner.Learner attribute)
(mvpa2.clfs.base.Learner attribute)
(mvpa2.clfs.enet.Sensitivity attribute)
(mvpa2.clfs.glmnet.Sensitivity attribute)
(mvpa2.clfs.gpr.Sensitivity attribute)
(mvpa2.clfs.lars.Sensitivity attribute)
(mvpa2.clfs.plr.Sensitivity attribute)
(mvpa2.clfs.smlr.Sensitivity attribute)
(mvpa2.featsel.rfe.Sensitivity attribute)
(mvpa2.mappers.base.Learner attribute)
(mvpa2.mappers.fx.BinomialProportionCI attribute)
(mvpa2.mappers.fx.FxMapper attribute)
(mvpa2.mappers.fx.MeanRemoval attribute)
(mvpa2.mappers.shape.AddAxisMapper attribute)
(mvpa2.mappers.shape.TransposeMapper attribute)
(mvpa2.mappers.skl_adaptor.Learner attribute)
(mvpa2.measures.base.Learner attribute)
(mvpa2.measures.base.RepeatedMeasure attribute)
(mvpa2.measures.base.Sensitivity attribute)
(mvpa2.measures.base.TransferMeasure attribute)
(mvpa2.measures.corrcoef.CorrCoef attribute)
(mvpa2.measures.corrstability.CorrStability attribute)
(mvpa2.measures.irelief.IterativeRelief attribute)
(mvpa2.measures.irelief.IterativeReliefOnline attribute)
(mvpa2.measures.irelief.IterativeReliefOnline_Devel attribute)
(mvpa2.measures.irelief.IterativeRelief_Devel attribute)
(mvpa2.measures.noiseperturbation.NoisePerturbationSensitivity attribute)
(mvpa2.measures.rsa.PDist attribute)
(mvpa2.measures.rsa.PDistConsistency attribute)
(mvpa2.measures.rsa.PDistTargetSimilarity attribute)
(mvpa2.measures.rsa.Regression attribute)
(mvpa2.measures.searchlight.BaseSearchlight attribute)
(mvpa2.measures.statsmodels_adaptor.UnivariateStatsModels attribute)
(mvpa2.measures.winner.WinnerMeasure attribute)
(mvpa2.testing.clfs.SillySensitivityAnalyzer attribute)
is_trained() (mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.testing.clfs.Classifier method)
isatty() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
isoformat() (mvpa2.base.report.datetime method)
istest() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
item() (mvpa2.algorithms.group_clusterthr.Dataset method)
(mvpa2.algorithms.hyperalignment.Dataset method)
(mvpa2.clfs.base.Dataset method)
(mvpa2.clfs.glmnet.Dataset method)
(mvpa2.clfs.gpr.Dataset method)
(mvpa2.clfs.knn.Dataset method)
(mvpa2.clfs.lars.Dataset method)
(mvpa2.clfs.meta.Dataset method)
(mvpa2.clfs.plr.Dataset method)
(mvpa2.clfs.smlr.Dataset method)
(mvpa2.clfs.stats.Dataset method)
(mvpa2.clfs.transerror.Dataset method)
(mvpa2.datasets.base.Dataset method)
(mvpa2.datasets.cosmo.Dataset method)
(mvpa2.datasets.eeglab.Dataset method)
(mvpa2.datasets.eep.Dataset method)
(mvpa2.datasets.eventrelated.Dataset method)
(mvpa2.datasets.formats.Dataset method)
(mvpa2.datasets.gifti.Dataset method)
(mvpa2.datasets.miscfx.Dataset method)
(mvpa2.datasets.mri.Dataset method)
(mvpa2.datasets.niml.Dataset method)
(mvpa2.mappers.filters.Dataset method)
(mvpa2.mappers.fx.Dataset method)
(mvpa2.mappers.fxy.Dataset method)
(mvpa2.mappers.glm.Dataset method)
(mvpa2.mappers.shape.Dataset method)
(mvpa2.mappers.zscore.Dataset method)
(mvpa2.measures.anova.Dataset method)
(mvpa2.measures.base.Dataset method)
(mvpa2.measures.corrcoef.Dataset method)
(mvpa2.measures.irelief.Dataset method)
(mvpa2.measures.noiseperturbation.Dataset method)
(mvpa2.measures.rsa.Dataset method)
(mvpa2.measures.searchlight.Dataset method)
(mvpa2.measures.statsmodels_adaptor.Dataset method)
(mvpa2.measures.winner.Dataset method)
(mvpa2.misc.data_generators.Dataset method)
(mvpa2.misc.plot.flat_surf.Dataset method)
(mvpa2.testing.clfs.Dataset method)
(mvpa2.testing.datasets.Dataset method)
items (mvpa2.clfs.warehouse.Warehouse attribute)
items() (mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
(mvpa2.misc.surfing.volume_mask_dict.Mapping method)
IterativeFeatureSelection (class in mvpa2.featsel.base)
(class in mvpa2.featsel.ifs)
(class in mvpa2.featsel.rfe)
IterativeRelief (class in mvpa2.measures.irelief)
IterativeRelief_Devel (class in mvpa2.measures.irelief)
IterativeReliefOnline (class in mvpa2.measures.irelief)
IterativeReliefOnline_Devel (class in mvpa2.measures.irelief)
iteritems() (mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
(mvpa2.misc.surfing.volume_mask_dict.Mapping method)
iterkeys() (mvpa2.misc.surfing.volume_mask_dict.Mapping method)
iterprod (in module mvpa2.generators.partition)
itervalues() (mvpa2.misc.surfing.volume_mask_dict.Mapping method)

K

K (mvpa2.mappers.som.SimpleSOMMapper attribute)
k() (mvpa2.measures.irelief.IterativeRelief method)
Kernel (class in mvpa2.kernels)
(class in mvpa2.kernels.base)
(class in mvpa2.kernels.libsvm)
(class in mvpa2.kernels.sg)
kernel (mvpa2.clfs.gpr.GPR attribute)
(mvpa2.clfs.warehouse.GPR attribute)
KernelParameter (class in mvpa2.base.param)
keys() (mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
(mvpa2.misc.surfing.volume_mask_dict.Mapping method)
keywords (mvpa2.measures.winner.partial attribute)
kNN
(class in mvpa2.clfs.knn)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
knn (mvpa2.measures.nnsearchlight.M1NNSearchlight attribute)
kstest() (in module mvpa2.clfs.stats)

L

l1_normed() (in module mvpa2.misc.transformers)
l2_normed() (in module mvpa2.misc.transformers)
Label
(class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
label2index() (in module mvpa2.support.nibabel.afni_niml_dset)
label_point() (mvpa2.atlases.base.XMLBasedAtlas method)
(mvpa2.atlases.fsl.XMLBasedAtlas method)
(mvpa2.atlases.warehouse.XMLBasedAtlas method)
label_voxel() (mvpa2.atlases.base.LabelsAtlas method)
(mvpa2.atlases.FSLProbabilisticAtlas method)
(mvpa2.atlases.LabelsAtlas method)
(mvpa2.atlases.ReferencesAtlas method)
(mvpa2.atlases.base.ReferencesAtlas method)
(mvpa2.atlases.fsl.FSLProbabilisticAtlas method)
(mvpa2.atlases.warehouse.FSLProbabilisticAtlas method)
(mvpa2.atlases.warehouse.LabelsAtlas method)
(mvpa2.atlases.warehouse.ReferencesAtlas method)
labels (mvpa2.atlases.base.LabelsLevel attribute)
(mvpa2.atlases.fsl.LabelsLevel attribute)
(mvpa2.atlases.warehouse.LabelsLevel attribute)
(mvpa2.clfs.base.ConfusionMatrix attribute)
(mvpa2.clfs.transerror.ClassifierError attribute)
(mvpa2.clfs.transerror.ConfusionMatrix attribute)
(mvpa2.featsel.rfe.ClassifierError attribute)
labels2chunks() (in module mvpa2.misc.io)
(in module mvpa2.misc.io.base)
labels_map (mvpa2.clfs.base.ConfusionMatrix attribute)
(mvpa2.clfs.transerror.ConfusionMatrix attribute)
LabelsAtlas (class in mvpa2.atlases)
(class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
LabelsLevel (class in mvpa2.atlases.base)
(class in mvpa2.atlases.fsl)
(class in mvpa2.atlases.warehouse)
labile() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
LARS (class in mvpa2.clfs.lars)
(class in mvpa2.clfs.warehouse)
LARSWeights (class in mvpa2.clfs.lars)
LDA (class in mvpa2.clfs.gda)
(class in mvpa2.clfs.warehouse)
Learner
(class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.base.learner)
(class in mvpa2.clfs.base)
(class in mvpa2.mappers.base)
(class in mvpa2.mappers.skl_adaptor)
(class in mvpa2.measures.base)
learner (mvpa2.measures.base.CrossValidation attribute)
least_sq_fit() (in module mvpa2.misc.fx)
leastsq() (in module mvpa2.misc.plot.topo)
legendre() (in module mvpa2.mappers.detrend)
legendre_() (in module mvpa2.mappers.detrend)
length_scale (mvpa2.clfs.gpr.SquaredExponentialKernel attribute)
(mvpa2.clfs.warehouse.SquaredExponentialKernel attribute)
(mvpa2.kernels.np.SquaredExponentialKernel attribute)
Less1Classifier (class in mvpa2.testing.clfs)
Level (class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
level (mvpa2.base.LevelLogger attribute)
(mvpa2.base.verbosity.LevelLogger attribute)
level_type (mvpa2.atlases.base.Level attribute)
(mvpa2.atlases.warehouse.Level attribute)
LevelLogger (class in mvpa2.base)
(class in mvpa2.base.verbosity)
levels (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
levels_listing() (mvpa2.atlases.base.ReferencesAtlas method)
(mvpa2.atlases.ReferencesAtlas method)
(mvpa2.atlases.base.XMLBasedAtlas method)
(mvpa2.atlases.fsl.XMLBasedAtlas method)
(mvpa2.atlases.warehouse.ReferencesAtlas method)
(mvpa2.atlases.warehouse.XMLBasedAtlas method)
lexists() (in module mvpa2.base.dataset)
lfprev (mvpa2.base.verbosity.Logger attribute)
LIBSVM, [1]
license
limit (mvpa2.clfs.stats.AttributePermutator attribute)
(mvpa2.generators.permutation.AttributePermutator attribute)
lin2ijk() (mvpa2.misc.surfing.volgeom.VolGeom method)
lin2xyz() (mvpa2.misc.surfing.volgeom.VolGeom method)
Linear (class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
linear1d_gaussian_noise() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
linear_awgn() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
linear_mask (mvpa2.misc.surfing.volgeom.VolGeom attribute)
linear_voxel_id2feature_id() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
LinearCSVMC (class in mvpa2.clfs.svm)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
LinearKernel (class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.np)
LinearLSKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.libsvm)
LinearNuSVMC (class in mvpa2.clfs.svm)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
LinearSGKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.sg)
LinearSVMKernel (in module mvpa2.clfs.svm)
(in module mvpa2.clfs.warehouse)
(in module mvpa2.testing.clfs)
linregress() (in module mvpa2.clfs.transerror)
listing (mvpa2.base.state.Collection attribute)
listing() (mvpa2.clfs.warehouse.Warehouse method)
LLEMapper (class in mvpa2.mappers.lle)
load() (mvpa2.misc.plot.lightbox.SpatialImage class method)
load_atlas() (mvpa2.atlases.base.XMLBasedAtlas method)
(mvpa2.atlases.fsl.XMLBasedAtlas method)
(mvpa2.atlases.warehouse.XMLBasedAtlas method)
load_events() (in module mvpa2.datasets.sources.bids)
load_example_fmri_dataset() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.native)
load_tutorial_data() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.native)
loadmat() (in module mvpa2.datasets.cosmo)
local_random_affine_transformations() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
locations() (mvpa2.misc.io.base.SensorLocations method)
(mvpa2.misc.io.SensorLocations method)
log10() (in module mvpa2.clfs.transerror)
Logger (class in mvpa2.base.verbosity)
long_description() (mvpa2.algorithms.group_clusterthr.EnsureChoice method)
(mvpa2.algorithms.group_clusterthr.EnsureRange method)
(mvpa2.algorithms.hyperalignment.AltConstraints method)
(mvpa2.algorithms.hyperalignment.Constraint method)
(mvpa2.algorithms.hyperalignment.Constraints method)
(mvpa2.algorithms.hyperalignment.EnsureBool method)
(mvpa2.algorithms.hyperalignment.EnsureChoice method)
(mvpa2.algorithms.hyperalignment.EnsureDType method)
(mvpa2.algorithms.hyperalignment.EnsureListOf method)
(mvpa2.algorithms.hyperalignment.EnsureNone method)
(mvpa2.algorithms.hyperalignment.EnsureRange method)
(mvpa2.algorithms.hyperalignment.EnsureStr method)
(mvpa2.algorithms.hyperalignment.EnsureTupleOf method)
(mvpa2.algorithms.searchlight_hyperalignment.AltConstraints method)
(mvpa2.algorithms.searchlight_hyperalignment.Constraint method)
(mvpa2.algorithms.searchlight_hyperalignment.Constraints method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureBool method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureChoice method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureDType method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureListOf method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureNone method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureRange method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureStr method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureTupleOf method)
(mvpa2.base.constraints.AltConstraints method)
(mvpa2.base.constraints.Constraint method)
(mvpa2.base.constraints.Constraints method)
(mvpa2.base.constraints.EnsureBool method)
(mvpa2.base.constraints.EnsureChoice method)
(mvpa2.base.constraints.EnsureDType method)
(mvpa2.base.constraints.EnsureListOf method)
(mvpa2.base.constraints.EnsureNone method)
(mvpa2.base.constraints.EnsureRange method)
(mvpa2.base.constraints.EnsureStr method)
(mvpa2.base.constraints.EnsureTupleOf method)
(mvpa2.clfs.gda.EnsureChoice method)
(mvpa2.clfs.glmnet.AltConstraints method)
(mvpa2.clfs.glmnet.Constraint method)
(mvpa2.clfs.glmnet.Constraints method)
(mvpa2.clfs.glmnet.EnsureBool method)
(mvpa2.clfs.glmnet.EnsureChoice method)
(mvpa2.clfs.glmnet.EnsureDType method)
(mvpa2.clfs.glmnet.EnsureListOf method)
(mvpa2.clfs.glmnet.EnsureNone method)
(mvpa2.clfs.glmnet.EnsureRange method)
(mvpa2.clfs.glmnet.EnsureStr method)
(mvpa2.clfs.glmnet.EnsureTupleOf method)
(mvpa2.clfs.gnb.EnsureChoice method)
(mvpa2.clfs.gpr.EnsureNone method)
(mvpa2.clfs.gpr.EnsureRange method)
(mvpa2.clfs.smlr.AltConstraints method)
(mvpa2.clfs.smlr.Constraint method)
(mvpa2.clfs.smlr.Constraints method)
(mvpa2.clfs.smlr.EnsureBool method)
(mvpa2.clfs.smlr.EnsureChoice method)
(mvpa2.clfs.smlr.EnsureDType method)
(mvpa2.clfs.smlr.EnsureListOf method)
(mvpa2.clfs.smlr.EnsureNone method)
(mvpa2.clfs.smlr.EnsureRange method)
(mvpa2.clfs.smlr.EnsureStr method)
(mvpa2.clfs.smlr.EnsureTupleOf method)
(mvpa2.kernels.np.EnsureListOf method)
(mvpa2.mappers.filters.EnsureChoice method)
(mvpa2.mappers.filters.EnsureNone method)
(mvpa2.mappers.fx.AltConstraints method)
(mvpa2.mappers.fx.Constraint method)
(mvpa2.mappers.fx.Constraints method)
(mvpa2.mappers.fx.EnsureBool method)
(mvpa2.mappers.fx.EnsureChoice method)
(mvpa2.mappers.fx.EnsureDType method)
(mvpa2.mappers.fx.EnsureListOf method)
(mvpa2.mappers.fx.EnsureNone method)
(mvpa2.mappers.fx.EnsureRange method)
(mvpa2.mappers.fx.EnsureStr method)
(mvpa2.mappers.fx.EnsureTupleOf method)
(mvpa2.mappers.procrustean.EnsureChoice method)
(mvpa2.measures.rsa.EnsureChoice method)
lower (mvpa2.clfs.warehouse.RangeElementSelector attribute)
(mvpa2.featsel.helpers.RangeElementSelector attribute)
lrn (mvpa2.clfs.warehouse.SplitRFE attribute)
(mvpa2.featsel.rfe.SplitRFE attribute)
LSKernel (class in mvpa2.kernels.libsvm)
lstsq() (in module mvpa2.clfs.ridge)

M

M1NNSearchlight (class in mvpa2.measures.nnsearchlight)
Machine Learning
MacOS X, [1], [2]
mahalanobis_distance() (in module mvpa2.clfs.distance)
make_decorator() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
make_file_map() (mvpa2.misc.plot.lightbox.SpatialImage class method)
make_flobs() (in module mvpa2.misc.fsl)
(in module mvpa2.misc.fsl.flobs)
manhatten_distance() (in module mvpa2.clfs.distance)
map2cosmo() (in module mvpa2.datasets.cosmo)
map2gifti() (in module mvpa2.datasets.gifti)
map2nifti() (in module mvpa2.datasets.mri)
map_to_high_resolution_surf() (mvpa2.support.nibabel.surf.Surface method)
map_to_high_resolution_surf_slow() (mvpa2.support.nibabel.surf.Surface method)
MapOverlap (class in mvpa2.misc.support)
MappedClassifier
(class in mvpa2.clfs.meta)
MappedClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta)
(class in mvpa2.measures.base)
Mapper
mapper, [1]
Mapper (class in mvpa2.mappers.base)
(class in mvpa2.mappers.boxcar)
(class in mvpa2.mappers.detrend)
(class in mvpa2.mappers.filters)
(class in mvpa2.mappers.flatten)
(class in mvpa2.mappers.fx)
(class in mvpa2.mappers.fxy)
(class in mvpa2.mappers.glm)
(class in mvpa2.mappers.mdp_adaptor)
(class in mvpa2.mappers.projection)
(class in mvpa2.mappers.shape)
(class in mvpa2.mappers.skl_adaptor)
(class in mvpa2.mappers.slicing)
(class in mvpa2.mappers.som)
(class in mvpa2.mappers.wavelet)
(class in mvpa2.mappers.zscore)
mapper (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.meta.MappedClassifier attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
mappers (mvpa2.mappers.base.CombinedMapper attribute)
Mapping (class in mvpa2.misc.surfing.volume_mask_dict)
mask (mvpa2.misc.fsl.melodic.MelodicResults attribute)
(mvpa2.misc.surfing.volgeom.VolGeom attribute)
mask2slice() (in module mvpa2.featsel.base)
(in module mvpa2.generators.splitters)
(in module mvpa2.mappers.slicing)
(in module mvpa2.misc.support)
mask_mapper() (in module mvpa2.datasets.base)
(in module mvpa2.mappers.flatten)
MASSLearnerAdapter (class in mvpa2.clfs.mass)
match() (mvpa2.base.collections.UniformLengthCollection method)
match_accuracy() (in module mvpa2.misc.errorfx)
match_distribution() (in module mvpa2.clfs.stats)
Matern_3_2Kernel (class in mvpa2.kernels.np)
Matern_5_2Kernel (class in mvpa2.kernels.np)
Matlab
matplotlib
matrices (mvpa2.clfs.base.ConfusionMatrix attribute)
(mvpa2.clfs.transerror.ConfusionMatrix attribute)
matrix (mvpa2.clfs.base.ConfusionMatrix attribute)
(mvpa2.clfs.transerror.ConfusionMatrix attribute)
matshow() (in module mvpa2.viz)
max (mvpa2.base.report.datetime attribute)
max_log_marginal_likelihood() (mvpa2.clfs.gpr.ModelSelector method)
(mvpa2.clfs.model_selector.ModelSelector method)
max_of_abs() (in module mvpa2.mappers.fx)
(in module mvpa2.misc.transformers)
maxcount (mvpa2.base.WarningLog attribute)
maxdims (mvpa2.algorithms.benchmarks.hyperalignment.FlattenMapper attribute)
(mvpa2.datasets.base.FlattenMapper attribute)
(mvpa2.datasets.cosmo.FlattenMapper attribute)
(mvpa2.datasets.eeglab.FlattenMapper attribute)
(mvpa2.datasets.eventrelated.FlattenMapper attribute)
(mvpa2.datasets.mri.FlattenMapper attribute)
(mvpa2.mappers.flatten.FlattenMapper attribute)
MaximalVote (class in mvpa2.clfs.meta)
maxofabs_sample() (in module mvpa2.clfs.warehouse)
(in module mvpa2.featsel.rfe)
(in module mvpa2.mappers.fx)
mbasename() (in module mvpa2.base.verbosity)
McFlirtParams (class in mvpa2.misc.fsl)
(class in mvpa2.misc.fsl.base)
MCNullDist (class in mvpa2.clfs.stats)
MDP
MDPFlowMapper (class in mvpa2.mappers.mdp_adaptor)
MDPNodeMapper (class in mvpa2.mappers.lle)
(class in mvpa2.mappers.mdp_adaptor)
mean_axis0() (in module mvpa2.algorithms.hyperalignment)
mean_feature() (in module mvpa2.mappers.fx)
mean_group_feature() (in module mvpa2.mappers.fx)
mean_group_sample() (in module mvpa2.algorithms.benchmarks.hyperalignment)
(in module mvpa2.mappers.fx)
(in module mvpa2.measures.winner)
mean_match_accuracy() (in module mvpa2.misc.errorfx)
mean_min() (in module mvpa2.clfs.distance)
mean_mismatch_error() (in module mvpa2.clfs.transerror)
(in module mvpa2.featsel.rfe)
(in module mvpa2.measures.base)
(in module mvpa2.misc.errorfx)
mean_power_fx() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
mean_sample() (in module mvpa2.algorithms.group_clusterthr)
(in module mvpa2.mappers.fx)
mean_xy() (in module mvpa2.algorithms.hyperalignment)
MeanPrediction (class in mvpa2.clfs.meta)
MeanRemoval (class in mvpa2.mappers.fx)
means (mvpa2.clfs.gda.GDA attribute)
(mvpa2.clfs.gnb.GNB attribute)
(mvpa2.clfs.warehouse.GNB attribute)
Measure (class in mvpa2.clfs.base)
(class in mvpa2.measures.base)
(class in mvpa2.measures.rsa)
(class in mvpa2.measures.searchlight)
(class in mvpa2.measures.winner)
measure (mvpa2.featsel.rfe.ProxyMeasure attribute)
(mvpa2.measures.base.ProxyMeasure attribute)
(mvpa2.measures.base.StaticMeasure attribute)
(mvpa2.measures.base.TransferMeasure attribute)
MelodicResults (class in mvpa2.misc.fsl.melodic)
merge() (in module mvpa2.support.nibabel.afni_niml_annot)
(in module mvpa2.support.nibabel.surf)
(mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
(mvpa2.support.nibabel.surf.Surface method)
merge2first() (in module mvpa2.mappers.fx)
merge_left_right() (in module mvpa2.support.nibabel.afni_suma_spec)
meta (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary attribute)
Meta-classifier
meta-classifier
method (mvpa2.featsel.base.CombinedFeatureSelection attribute)
metrics (mvpa2.base.DebugLogger attribute)
(mvpa2.base.verbosity.DebugLogger attribute)
microsecond (mvpa2.base.report.datetime attribute)
min (mvpa2.base.report.datetime attribute)
minute (mvpa2.base.report.datetime attribute)
misc
mismatch_error() (in module mvpa2.misc.errorfx)
mkds
mkevds
mkstemp() (in module mvpa2.base.info)
mktemp() (in module mvpa2.algorithms.searchlight_hyperalignment)
mode (mvpa2.featsel.helpers.ElementSelector attribute)
(mvpa2.mappers.svd.ElementSelector attribute)
model (mvpa2.clfs.svm.SVM attribute)
(mvpa2.clfs.warehouse.SVM attribute)
(mvpa2.testing.clfs.SVM attribute)
model selection, [1]
ModelSelector (class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.model_selector)
modular architecture
monte-carlo, [1], [2]
most_common() (mvpa2.algorithms.group_clusterthr.Counter method)
motion correction
MulticlassClassifier (class in mvpa2.clfs.meta)
(class in mvpa2.clfs.warehouse)
multiple_chunks() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
MultiStopCrit (class in mvpa2.featsel.helpers)
MVPA, [1]
MVPA toolbox for Matlab, [1]
mvpa2 (module)
mvpa2.algorithms (module)
mvpa2.algorithms.benchmarks (module)
mvpa2.algorithms.benchmarks.hyperalignment (module)
mvpa2.algorithms.group_clusterthr (module)
mvpa2.algorithms.hyperalignment (module)
mvpa2.algorithms.searchlight_hyperalignment (module)
mvpa2.atlases (module)
mvpa2.atlases.base (module)
mvpa2.atlases.fsl (module)
mvpa2.atlases.warehouse (module)
mvpa2.base (module)
mvpa2.base.attributes (module)
mvpa2.base.collections (module)
mvpa2.base.config (module)
mvpa2.base.constraints (module)
mvpa2.base.dataset (module)
mvpa2.base.dochelpers (module)
mvpa2.base.externals (module)
mvpa2.base.hdf5 (module)
mvpa2.base.info (module)
mvpa2.base.learner (module)
mvpa2.base.node (module)
mvpa2.base.param (module)
mvpa2.base.progress (module)
mvpa2.base.report (module)
mvpa2.base.state (module)
mvpa2.base.types (module)
mvpa2.base.verbosity (module)
mvpa2.clfs.base (module)
mvpa2.clfs.blr (module)
mvpa2.clfs.distance (module)
mvpa2.clfs.enet (module)
mvpa2.clfs.gda (module)
mvpa2.clfs.glmnet (module)
mvpa2.clfs.gnb (module)
mvpa2.clfs.gpr (module)
mvpa2.clfs.knn (module)
mvpa2.clfs.lars (module)
mvpa2.clfs.libsvmc (module)
mvpa2.clfs.mass (module)
mvpa2.clfs.meta (module)
mvpa2.clfs.model_selector (module)
mvpa2.clfs.plr (module)
mvpa2.clfs.ridge (module)
mvpa2.clfs.sg (module)
mvpa2.clfs.similarity (module)
mvpa2.clfs.skl (module)
mvpa2.clfs.smlr (module)
mvpa2.clfs.stats (module)
mvpa2.clfs.svm (module)
mvpa2.clfs.transerror (module)
mvpa2.clfs.warehouse (module)
mvpa2.datasets.base (module)
mvpa2.datasets.channel (module)
mvpa2.datasets.cosmo (module)
mvpa2.datasets.eeglab (module)
mvpa2.datasets.eep (module)
mvpa2.datasets.eventrelated (module)
mvpa2.datasets.formats (module)
mvpa2.datasets.gifti (module)
mvpa2.datasets.miscfx (module)
mvpa2.datasets.mri (module)
mvpa2.datasets.niml (module)
mvpa2.datasets.sources (module)
mvpa2.datasets.sources.bids (module)
mvpa2.datasets.sources.native (module)
mvpa2.datasets.sources.openfmri (module)
mvpa2.datasets.sources.skl_data (module)
mvpa2.featsel.base (module)
mvpa2.featsel.helpers (module)
mvpa2.featsel.ifs (module)
mvpa2.featsel.rfe (module)
mvpa2.generators (module)
mvpa2.generators.base (module)
mvpa2.generators.partition (module)
mvpa2.generators.permutation (module)
mvpa2.generators.resampling (module)
mvpa2.generators.splitters (module)
mvpa2.kernels (module)
mvpa2.kernels.base (module)
mvpa2.kernels.libsvm (module)
mvpa2.kernels.np (module)
mvpa2.kernels.sg (module)
mvpa2.mappers (module)
mvpa2.mappers.base (module)
mvpa2.mappers.boxcar (module)
mvpa2.mappers.detrend (module)
mvpa2.mappers.filters (module)
mvpa2.mappers.flatten (module)
mvpa2.mappers.fx (module)
mvpa2.mappers.fxy (module)
mvpa2.mappers.glm (module)
mvpa2.mappers.lle (module)
mvpa2.mappers.mdp_adaptor (module)
mvpa2.mappers.procrustean (module)
mvpa2.mappers.projection (module)
mvpa2.mappers.prototype (module)
mvpa2.mappers.shape (module)
mvpa2.mappers.skl_adaptor (module)
mvpa2.mappers.slicing (module)
mvpa2.mappers.som (module)
mvpa2.mappers.staticprojection (module)
mvpa2.mappers.svd (module)
mvpa2.mappers.wavelet (module)
mvpa2.mappers.zscore (module)
mvpa2.measures.anova (module)
mvpa2.measures.base (module)
mvpa2.measures.corrcoef (module)
mvpa2.measures.corrstability (module)
mvpa2.measures.gnbsearchlight (module)
mvpa2.measures.irelief (module)
mvpa2.measures.nnsearchlight (module)
mvpa2.measures.noiseperturbation (module)
mvpa2.measures.rsa (module)
mvpa2.measures.searchlight (module)
mvpa2.measures.statsmodels_adaptor (module)
mvpa2.measures.winner (module)
mvpa2.misc (module)
mvpa2.misc.args (module)
mvpa2.misc.attrmap (module)
mvpa2.misc.bv (module)
mvpa2.misc.bv.base (module)
mvpa2.misc.cmdline (module)
mvpa2.misc.data_generators (module)
mvpa2.misc.dcov (module)
mvpa2.misc.errorfx (module)
mvpa2.misc.exceptions (module)
mvpa2.misc.fsl (module)
mvpa2.misc.fsl.base (module)
mvpa2.misc.fsl.flobs (module)
mvpa2.misc.fsl.melodic (module)
mvpa2.misc.fx (module)
mvpa2.misc.io (module)
mvpa2.misc.io.base (module)
mvpa2.misc.io.meg (module)
mvpa2.misc.neighborhood (module)
mvpa2.misc.plot (module)
mvpa2.misc.plot.base (module)
mvpa2.misc.plot.erp (module)
mvpa2.misc.plot.flat_surf (module)
mvpa2.misc.plot.lightbox (module)
mvpa2.misc.plot.scatter (module)
mvpa2.misc.plot.topo (module)
mvpa2.misc.sampleslookup (module)
mvpa2.misc.stats (module)
mvpa2.misc.support (module)
mvpa2.misc.surfing (module)
mvpa2.misc.surfing.queryengine (module)
mvpa2.misc.surfing.surf_voxel_selection (module)
mvpa2.misc.surfing.volgeom (module)
mvpa2.misc.surfing.volsurf (module)
mvpa2.misc.surfing.volume_mask_dict (module)
mvpa2.misc.transformers (module)
mvpa2.misc.vproperty (module)
mvpa2.support.bayes (module)
mvpa2.support.nibabel (module)
mvpa2.support.nibabel.afni_niml (module)
mvpa2.support.nibabel.afni_niml_annot (module)
mvpa2.support.nibabel.afni_niml_dset (module)
mvpa2.support.nibabel.afni_niml_roi (module)
mvpa2.support.nibabel.afni_suma_1d (module)
mvpa2.support.nibabel.afni_suma_spec (module)
mvpa2.support.nibabel.surf (module)
mvpa2.support.nibabel.surf_caret (module)
mvpa2.support.nibabel.surf_fs_asc (module)
mvpa2.support.nibabel.surf_gifti (module)
mvpa2.testing (module)
mvpa2.testing.clfs (module)
mvpa2.testing.datasets (module)
mvpa2.testing.tools (module)
mvpa2.tests (module)
mvpa2.viz (module)
MVPA_DEBUG, [1], [2]
MVPA_DEBUG_METRICS
MVPA_DEBUG_WTF
MVPA_EXAMPLES_INTERACTIVE
MVPA_MATPLOTLIB_BACKEND
MVPA_QUICKTEST
MVPA_SEED
MVPA_SVM_BACKEND
MVPA_TESTS_LABILE, [1]
MVPA_TESTS_QUICK, [1]
MVPA_VERBOSE
MVPA_VERBOSE_OUTPUT
MVPA_WARNINGS_BT
MVPA_WARNINGS_COUNT, [1]
MVPA_WARNINGS_SUPPRESS

N

name (mvpa2.base.attributes.Collectable attribute)
(mvpa2.base.collections.Collectable attribute)
(mvpa2.clfs.transerror.Collectable attribute)
nanmax_wrapper() (in module mvpa2.misc.plot.flat_surf)
nanmean() (in module mvpa2.clfs.stats)
(in module mvpa2.clfs.transerror)
nanmean_face_normal (mvpa2.support.nibabel.surf.Surface attribute)
nanmin_wrapper() (in module mvpa2.misc.plot.flat_surf)
NBackHistoryStopCrit (class in mvpa2.featsel.base)
(class in mvpa2.featsel.helpers)
(class in mvpa2.featsel.ifs)
(class in mvpa2.featsel.rfe)
nchannels (mvpa2.datasets.eep.EEPBin attribute)
ncolumns (mvpa2.misc.bv.base.ColumnData attribute)
(mvpa2.misc.bv.ColumnData attribute)
(mvpa2.misc.fsl.ColumnData attribute)
(mvpa2.misc.fsl.base.ColumnData attribute)
(mvpa2.misc.io.ColumnData attribute)
(mvpa2.misc.io.base.ColumnData attribute)
ncombinations() (in module mvpa2.misc.support)
Ndiag() (in module mvpa2.clfs.gpr)
Ndot() (in module mvpa2.clfs.gpr)
nearest_node_index() (mvpa2.support.nibabel.surf.Surface method)
neglabels (mvpa2.clfs.meta.BinaryClassifier attribute)
neighbors (mvpa2.support.nibabel.surf.Surface attribute)
nelements (mvpa2.algorithms.searchlight_hyperalignment.FixedNElementTailSelector attribute)
(mvpa2.clfs.warehouse.FixedNElementTailSelector attribute)
(mvpa2.featsel.helpers.FixedNElementTailSelector attribute)
(mvpa2.featsel.ifs.FixedNElementTailSelector attribute)
Neural Data Modality
nevs (mvpa2.misc.fsl.base.FslEV3 attribute)
(mvpa2.misc.fsl.FslEV3 attribute)
next (mvpa2.measures.rsa.combinations attribute)
(mvpa2.misc.support.product attribute)
(mvpa2.support.nibabel.afni_niml.BytesIO attribute)
next() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
nfaces (mvpa2.support.nibabel.surf.Surface attribute)
nfeatures (mvpa2.base.dataset.AttrDataset attribute)
(mvpa2.base.learner.AttrDataset attribute)
(mvpa2.datasets.base.AttrDataset attribute)
(mvpa2.datasets.gifti.AttrDataset attribute)
(mvpa2.featsel.helpers.AttrDataset attribute)
(mvpa2.measures.base.AttrDataset attribute)
(mvpa2.misc.surfing.queryengine.AttrDataset attribute)
nfeatures_min (mvpa2.featsel.rfe.RFE attribute)
NFoldPartitioner (class in mvpa2.algorithms.benchmarks.hyperalignment)
(class in mvpa2.clfs.meta)
(class in mvpa2.generators.partition)
(class in mvpa2.misc.plot)
(class in mvpa2.misc.plot.base)
(class in mvpa2.viz)
NGroupPartitioner (class in mvpa2.generators.partition)
ngroups (mvpa2.generators.partition.NGroupPartitioner attribute)
NiBabel
nic (mvpa2.misc.fsl.melodic.MelodicResults attribute)
NIfTI
niml_roi2roi_mapping() (in module mvpa2.support.nibabel.afni_niml_roi)
NiPyGLMMapper (class in mvpa2.mappers.glm)
NLAcholesky() (in module mvpa2.clfs.gpr)
NLAsolve() (in module mvpa2.clfs.gpr)
nlevels (mvpa2.atlases.base.PyMVPAAtlas attribute)
(mvpa2.atlases.warehouse.PyMVPAAtlas attribute)
NLP() (in module mvpa2.clfs.model_selector)
nnlf() (mvpa2.clfs.stats.rv_semifrozen method)
nnz (mvpa2.algorithms.group_clusterthr.dok_matrix attribute)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix attribute)
Node (class in mvpa2.base.learner)
(class in mvpa2.base.node)
(class in mvpa2.clfs.transerror)
(class in mvpa2.generators.base)
(class in mvpa2.generators.partition)
(class in mvpa2.generators.permutation)
(class in mvpa2.generators.resampling)
(class in mvpa2.generators.splitters)
(class in mvpa2.mappers.fx)
(class in mvpa2.mappers.slicing)
(class in mvpa2.measures.base)
node (mvpa2.measures.base.RepeatedMeasure attribute)
node2faces (mvpa2.support.nibabel.surf.Surface attribute)
node_areas (mvpa2.support.nibabel.surf.Surface attribute)
node_normals (mvpa2.support.nibabel.surf.Surface attribute)
nodebug() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
nodes (mvpa2.base.learner.CompoundNode attribute)
(mvpa2.base.node.CompoundNode attribute)
nodes2voxel_attributes() (mvpa2.misc.surfing.surf_voxel_selection.VoxelSelector method)
nodes_on_border() (mvpa2.support.nibabel.surf.Surface method)
nodes_on_border_paths() (mvpa2.support.nibabel.surf.Surface method)
NoisePerturbationSensitivity (class in mvpa2.measures.noiseperturbation)
noisy_2d_fx() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
Nonparametric (class in mvpa2.clfs.stats)
nonzero() (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method)
norm() (in module mvpa2.atlases.base)
(in module mvpa2.atlases.warehouse)
normal_feature_dataset() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
normalized() (in module mvpa2.support.nibabel.surf)
nottest() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
now() (mvpa2.base.report.datetime method)
nrows (mvpa2.misc.bv.base.ColumnData attribute)
(mvpa2.misc.bv.ColumnData attribute)
(mvpa2.misc.fsl.ColumnData attribute)
(mvpa2.misc.fsl.base.ColumnData attribute)
(mvpa2.misc.io.ColumnData attribute)
(mvpa2.misc.io.base.ColumnData attribute)
nsamples (mvpa2.base.dataset.AttrDataset attribute)
(mvpa2.base.learner.AttrDataset attribute)
(mvpa2.datasets.base.AttrDataset attribute)
(mvpa2.datasets.eep.EEPBin attribute)
(mvpa2.datasets.gifti.AttrDataset attribute)
(mvpa2.featsel.helpers.AttrDataset attribute)
(mvpa2.measures.base.AttrDataset attribute)
(mvpa2.misc.io.SampleAttributes attribute)
(mvpa2.misc.io.base.SampleAttributes attribute)
(mvpa2.misc.surfing.queryengine.AttrDataset attribute)
nsamples_per_class (mvpa2.clfs.gda.GDA attribute)
NStepsStopCrit (class in mvpa2.featsel.helpers)
ntimepoints (mvpa2.datasets.eep.EEPBin attribute)
null_dist (mvpa2.clfs.base.Measure attribute)
(mvpa2.measures.base.Measure attribute)
(mvpa2.measures.rsa.Measure attribute)
(mvpa2.measures.searchlight.Measure attribute)
(mvpa2.measures.winner.Measure attribute)
null_prob (mvpa2.clfs.base.Measure attribute)
(mvpa2.measures.base.Measure attribute)
(mvpa2.measures.rsa.Measure attribute)
(mvpa2.measures.searchlight.Measure attribute)
(mvpa2.measures.winner.Measure attribute)
null_t (mvpa2.clfs.base.Measure attribute)
(mvpa2.measures.base.Measure attribute)
(mvpa2.measures.rsa.Measure attribute)
(mvpa2.measures.searchlight.Measure attribute)
(mvpa2.measures.winner.Measure attribute)
NullDist (class in mvpa2.clfs.stats)
NumPy
NumpyKernel (class in mvpa2.kernels)
(class in mvpa2.kernels.base)
(class in mvpa2.kernels.np)
nvertices (mvpa2.support.nibabel.surf.Surface attribute)
nvoxels (mvpa2.misc.surfing.volgeom.VolGeom attribute)
nvoxels_mask (mvpa2.misc.surfing.volgeom.VolGeom attribute)

O

O (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
obj2hdf() (in module mvpa2.base.hdf5)
obtain_from_dot() (mvpa2.kernels.sg.RealFeatures method)
obtain_from_generic() (mvpa2.kernels.sg.RealFeatures static method)
OddEvenPartitioner (class in mvpa2.clfs.warehouse)
(class in mvpa2.generators.partition)
(class in mvpa2.testing.datasets)
offsetbydepth (mvpa2.base.DebugLogger attribute)
(mvpa2.base.verbosity.DebugLogger attribute)
ok_() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
OnceLogger (class in mvpa2.base)
(class in mvpa2.base.verbosity)
one_minus() (in module mvpa2.misc.transformers)
one_minus_correlation() (in module mvpa2.clfs.distance)
(in module mvpa2.measures.nnsearchlight)
ones() (in module mvpa2.clfs.gda)
(in module mvpa2.clfs.gnb)
OneWayAnova (class in mvpa2.clfs.warehouse)
(class in mvpa2.measures.anova)
onsets (mvpa2.misc.fsl.base.FslEV3 attribute)
(mvpa2.misc.fsl.FslEV3 attribute)
OpenFMRI, [1]
OpenFMRIDataset (class in mvpa2.datasets.sources)
(class in mvpa2.datasets.sources.openfmri)
OpenSUSE, [1]
optimization
Option (class in mvpa2.misc.cmdline)
OptionGroup (class in mvpa2.misc.cmdline)
OptionGroups (class in mvpa2.misc.cmdline)
OptionParser (class in mvpa2.misc.cmdline)
Options (class in mvpa2.misc.cmdline)
order (mvpa2.mappers.fx.FxMapper attribute)
origin (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
oshape (mvpa2.datasets.base.StaticFeatureSelection attribute)
(mvpa2.datasets.cosmo.StaticFeatureSelection attribute)
(mvpa2.featsel.base.StaticFeatureSelection attribute)
(mvpa2.featsel.ifs.StaticFeatureSelection attribute)
(mvpa2.mappers.flatten.StaticFeatureSelection attribute)
(mvpa2.measures.searchlight.StaticFeatureSelection attribute)
OverAxis (class in mvpa2.misc.transformers)

P

p() (mvpa2.clfs.stats.NullDist method)
pairwise_near_nodes() (mvpa2.support.nibabel.surf.Surface method)
param_est (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute)
(mvpa2.mappers.zscore.ZScoreMapper attribute)
Parameter (class in mvpa2.algorithms.group_clusterthr)
(class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.param)
(class in mvpa2.clfs.base)
(class in mvpa2.clfs.gda)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gnb)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.meta)
(class in mvpa2.clfs.smlr)
(class in mvpa2.kernels.base)
(class in mvpa2.kernels.libsvm)
(class in mvpa2.kernels.np)
(class in mvpa2.kernels.sg)
(class in mvpa2.mappers.detrend)
(class in mvpa2.mappers.filters)
(class in mvpa2.mappers.fx)
(class in mvpa2.mappers.glm)
(class in mvpa2.mappers.procrustean)
(class in mvpa2.measures.rsa)
ParameterCollection (class in mvpa2.base.state)
params (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute)
(mvpa2.mappers.zscore.ZScoreMapper attribute)
parse() (mvpa2.base.externals.SmartVersion method)
(mvpa2.misc.support.SmartVersion method)
parse_args() (mvpa2.misc.cmdline.OptionParser method)
parse_status() (in module mvpa2.base.verbosity)
partial (class in mvpa2.measures.winner)
Partitioner (class in mvpa2.generators.partition)
partitioner (mvpa2.clfs.meta.SplitClassifier attribute)
(mvpa2.clfs.warehouse.SplitClassifier attribute)
pass_attr (mvpa2.base.learner.Node attribute)
(mvpa2.base.node.Node attribute)
(mvpa2.clfs.transerror.Node attribute)
(mvpa2.generators.base.Node attribute)
(mvpa2.generators.partition.Node attribute)
(mvpa2.generators.permutation.Node attribute)
(mvpa2.generators.resampling.Node attribute)
(mvpa2.generators.splitters.Node attribute)
(mvpa2.mappers.fx.Node attribute)
(mvpa2.mappers.slicing.Node attribute)
(mvpa2.measures.base.Node attribute)
path (mvpa2.misc.fsl.melodic.MelodicResults attribute)
pathjoin() (in module mvpa2)
(in module mvpa2.base.config)
(in module mvpa2.base.info)
(in module mvpa2.base.report)
(in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.native)
(in module mvpa2.misc.fsl)
(in module mvpa2.misc.fsl.flobs)
(in module mvpa2.misc.support)
(in module mvpa2.support.nibabel.afni_suma_spec)
(in module mvpa2.support.nibabel.surf_caret)
(in module mvpa2.testing)
(in module mvpa2.testing.datasets)
(in module mvpa2.testing.tools)
PCAMapper (class in mvpa2.mappers.mdp_adaptor)
PDist (class in mvpa2.measures.rsa)
pdist() (in module mvpa2.measures.rsa)
PDistConsistency (class in mvpa2.measures.rsa)
PDistTargetSimilarity (class in mvpa2.measures.rsa)
pearson_correlation() (in module mvpa2.measures.corrcoef)
pearsonr() (in module mvpa2.measures.rsa)
(in module mvpa2.misc.errorfx)
percent_correct (mvpa2.clfs.base.ConfusionMatrix attribute)
(mvpa2.clfs.transerror.ConfusionMatrix attribute)
permutation, [1], [2]
pial_surface (mvpa2.misc.surfing.volsurf.VolSurf attribute)
Pioff() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
(in module mvpa2.misc.plot.lightbox)
Pion() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
(in module mvpa2.misc.plot.lightbox)
plot() (mvpa2.clfs.base.ConfusionMatrix method)
(mvpa2.clfs.base.RegressionStatistics method)
(mvpa2.clfs.transerror.ConfusionMatrix method)
(mvpa2.clfs.transerror.ROCCurve method)
(mvpa2.clfs.transerror.RegressionStatistics method)
(mvpa2.datasets.miscfx.SequenceStats method)
(mvpa2.misc.fsl.FslGLMDesign method)
(mvpa2.misc.fsl.McFlirtParams method)
(mvpa2.misc.fsl.base.FslGLMDesign method)
(mvpa2.misc.fsl.base.McFlirtParams method)
plot_bars() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_dataset_chunks() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_decision_boundary_2d() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_distribution_matches() (in module mvpa2.clfs.stats)
plot_erp() (in module mvpa2.misc.plot.erp)
plot_erps() (in module mvpa2.misc.plot.erp)
plot_err_line() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_err_line_missing() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_feature_hist() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_head_outline() (in module mvpa2.misc.plot.topo)
plot_head_topography() (in module mvpa2.misc.plot.topo)
plot_lightbox() (in module mvpa2.misc.plot.lightbox)
plot_samples_distance() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
plot_scatter() (in module mvpa2.misc.plot.scatter)
plot_scatter_files() (in module mvpa2.misc.plot.scatter)
plot_scatter_matrix() (in module mvpa2.misc.plot.scatter)
plotmotionqc
plotting
plotting example
PLR (class in mvpa2.clfs.plr)
(class in mvpa2.clfs.warehouse)
PLRWeights (class in mvpa2.clfs.plr)
pmeasure (mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
pnorm_w() (in module mvpa2.clfs.distance)
(in module mvpa2.measures.irelief)
pnorm_w_python() (in module mvpa2.clfs.distance)
poly_detrend() (in module mvpa2.mappers.detrend)
PolyDetrendMapper (class in mvpa2.mappers.detrend)
PolyKernel (class in mvpa2.kernels.np)
PolyLSKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.libsvm)
PolySGKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.sg)
poslabels (mvpa2.clfs.meta.BinaryClassifier attribute)
postproc (mvpa2.base.learner.Node attribute)
(mvpa2.base.node.Node attribute)
(mvpa2.clfs.transerror.Node attribute)
(mvpa2.generators.base.Node attribute)
(mvpa2.generators.partition.Node attribute)
(mvpa2.generators.permutation.Node attribute)
(mvpa2.generators.resampling.Node attribute)
(mvpa2.generators.splitters.Node attribute)
(mvpa2.mappers.fx.Node attribute)
(mvpa2.mappers.slicing.Node attribute)
(mvpa2.measures.base.Node attribute)
PrecomputedKernel (class in mvpa2.kernels)
(class in mvpa2.kernels.base)
PrecomputedSGKernel (class in mvpa2.kernels.sg)
predict() (mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.testing.clfs.Classifier method)
prediction_target_matches() (in module mvpa2.misc.errorfx)
PredictionsCombiner (class in mvpa2.clfs.meta)
prep-afni-surf
prep-fmri
preproc
preprocessed_dataset() (in module mvpa2.datasets.base)
print_help() (mvpa2.misc.cmdline.OptionParser method)
print_registered() (mvpa2.base.verbosity.SetLogger method)
(mvpa2.clfs.warehouse.Warehouse method)
print_usage() (mvpa2.misc.cmdline.OptionParser method)
print_version() (mvpa2.misc.cmdline.OptionParser method)
printsetid (mvpa2.base.verbosity.SetLogger attribute)
priors (mvpa2.clfs.gda.GDA attribute)
(mvpa2.clfs.gnb.GNB attribute)
(mvpa2.clfs.warehouse.GNB attribute)
process() (mvpa2.misc.cmdline.Option method)
Processing object
ProcrusteanMapper (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.mappers.procrustean)
product (class in mvpa2.misc.support)
ProductFlattenMapper (class in mvpa2.mappers.flatten)
progress tracking
ProgressBar (class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.base.progress)
(class in mvpa2.measures.searchlight)
(class in mvpa2.misc.surfing.surf_voxel_selection)
(class in mvpa2.misc.surfing.volsurf)
proj (mvpa2.mappers.mdp_adaptor.ICAMapper attribute)
(mvpa2.mappers.mdp_adaptor.PCAMapper attribute)
(mvpa2.mappers.procrustean.ProjectionMapper attribute)
(mvpa2.mappers.projection.ProjectionMapper attribute)
(mvpa2.mappers.prototype.ProjectionMapper attribute)
(mvpa2.mappers.staticprojection.ProjectionMapper attribute)
(mvpa2.mappers.svd.ProjectionMapper attribute)
project_vertices() (mvpa2.support.nibabel.surf.Surface method)
ProjectionMapper (class in mvpa2.mappers.procrustean)
(class in mvpa2.mappers.projection)
(class in mvpa2.mappers.prototype)
(class in mvpa2.mappers.staticprojection)
(class in mvpa2.mappers.svd)
props (mvpa2.datasets.eep.DataReader attribute)
(mvpa2.misc.io.DataReader attribute)
(mvpa2.misc.io.base.DataReader attribute)
PrototypeMapper (class in mvpa2.mappers.prototype)
ProxyClassifier (class in mvpa2.clfs.meta)
(class in mvpa2.featsel.rfe)
ProxyClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta)
(class in mvpa2.measures.base)
ProxyMeasure (class in mvpa2.featsel.rfe)
(class in mvpa2.measures.base)
Publications
pure_multivariate_signal() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
PyMatlab
PyMVPA poster
pymvpa2
PyMVPAAtlas (class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)

Q

QDA (class in mvpa2.clfs.gda)
(class in mvpa2.clfs.warehouse)
query() (mvpa2.algorithms.searchlight_hyperalignment.IndexQueryEngine method)
(mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.atlases.base.XMLBasedAtlas method)
(mvpa2.atlases.fsl.XMLBasedAtlas method)
(mvpa2.atlases.warehouse.XMLBasedAtlas method)
(mvpa2.datasets.cosmo.CosmoQueryEngine method)
(mvpa2.datasets.cosmo.QueryEngineInterface method)
(mvpa2.measures.gnbsearchlight.IndexQueryEngine method)
(mvpa2.measures.nnsearchlight.IndexQueryEngine method)
(mvpa2.measures.searchlight.IndexQueryEngine method)
(mvpa2.misc.data_generators.IndexQueryEngine method)
(mvpa2.misc.neighborhood.CachedQueryEngine method)
(mvpa2.misc.neighborhood.IndexQueryEngine method)
(mvpa2.misc.neighborhood.QueryEngineInterface method)
(mvpa2.misc.surfing.queryengine.QueryEngineInterface method)
(mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
(mvpa2.testing.datasets.IndexQueryEngine method)
query_byid() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.datasets.cosmo.CosmoQueryEngine method)
(mvpa2.datasets.cosmo.QueryEngineInterface method)
(mvpa2.misc.neighborhood.CachedQueryEngine method)
(mvpa2.misc.neighborhood.QueryEngine method)
(mvpa2.misc.neighborhood.QueryEngineInterface method)
(mvpa2.misc.surfing.queryengine.QueryEngineInterface method)
(mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method)
QueryEngine (class in mvpa2.misc.neighborhood)
queryengine (mvpa2.measures.searchlight.BaseSearchlight attribute)
(mvpa2.misc.neighborhood.CachedQueryEngine attribute)
QueryEngineInterface (class in mvpa2.datasets.cosmo)
(class in mvpa2.misc.neighborhood)
(class in mvpa2.misc.surfing.queryengine)

R

R
radius (mvpa2.algorithms.searchlight_hyperalignment.Sphere attribute)
(mvpa2.measures.gnbsearchlight.Sphere attribute)
(mvpa2.measures.nnsearchlight.Sphere attribute)
(mvpa2.measures.searchlight.Sphere attribute)
(mvpa2.misc.neighborhood.Sphere attribute)
(mvpa2.misc.surfing.volgeom.Sphere attribute)
raises() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
random number generation
random_affine_transformation() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
random_samples() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
RandomClassifier (class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
RangeElementSelector (class in mvpa2.clfs.warehouse)
(class in mvpa2.featsel.helpers)
rank_order() (in module mvpa2.misc.transformers)
rankdata() (in module mvpa2.measures.rsa)
RationalQuadraticKernel (class in mvpa2.kernels.np)
rawniml2annot() (in module mvpa2.support.nibabel.afni_niml_annot)
rawniml2dset() (in module mvpa2.support.nibabel.afni_niml_dset)
rawniml2string() (in module mvpa2.support.nibabel.afni_niml)
RbfCSVMC (class in mvpa2.clfs.svm)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
RbfKernel (class in mvpa2.kernels.np)
RbfLSKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.libsvm)
RbfNuSVMC (class in mvpa2.clfs.svm)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
RbfSGKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.sg)
RbfSVMKernel (in module mvpa2.clfs.svm)
(in module mvpa2.clfs.warehouse)
(in module mvpa2.testing.clfs)
rcdf() (mvpa2.clfs.stats.MCNullDist method)
(mvpa2.clfs.stats.Nonparametric method)
(mvpa2.clfs.stats.NullDist method)
read() (in module mvpa2.datasets.niml)
(in module mvpa2.support.nibabel.afni_niml)
(in module mvpa2.support.nibabel.afni_niml_annot)
(in module mvpa2.support.nibabel.afni_niml_dset)
(in module mvpa2.support.nibabel.afni_niml_roi)
(in module mvpa2.support.nibabel.afni_suma_1d)
(in module mvpa2.support.nibabel.afni_suma_spec)
(in module mvpa2.support.nibabel.surf)
(in module mvpa2.support.nibabel.surf_caret)
(in module mvpa2.support.nibabel.surf_fs_asc)
(in module mvpa2.support.nibabel.surf_gifti)
(mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
read1() (mvpa2.support.nibabel.afni_niml.BytesIO method)
read_fsl_design() (in module mvpa2.misc.fsl)
(in module mvpa2.misc.fsl.base)
read_mapping() (in module mvpa2.support.nibabel.afni_niml_roi)
read_topology() (in module mvpa2.support.nibabel.surf_caret)
readable() (mvpa2.support.nibabel.afni_niml.BytesIO method)
readinto() (mvpa2.support.nibabel.afni_niml.BytesIO method)
readline() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
readlines() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
RealFeatures (class in mvpa2.kernels.sg)
recommended software
recon (mvpa2.mappers.mdp_adaptor.ICAMapper attribute)
(mvpa2.mappers.mdp_adaptor.PCAMapper attribute)
(mvpa2.mappers.procrustean.ProjectionMapper attribute)
(mvpa2.mappers.projection.ProjectionMapper attribute)
(mvpa2.mappers.prototype.ProjectionMapper attribute)
(mvpa2.mappers.staticprojection.ProjectionMapper attribute)
(mvpa2.mappers.svd.ProjectionMapper attribute)
redirecting output
reference_level (mvpa2.atlases.base.ReferencesAtlas attribute)
(mvpa2.atlases.ReferencesAtlas attribute)
(mvpa2.atlases.warehouse.ReferencesAtlas attribute)
references
ReferencesAtlas (class in mvpa2.atlases)
(class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
ReferencesLevel (class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
register() (mvpa2.base.verbosity.SetLogger method)
register_metric() (mvpa2.base.DebugLogger method)
(mvpa2.base.verbosity.DebugLogger method)
registered (mvpa2.base.verbosity.SetLogger attribute)
Regression (class in mvpa2.measures.rsa)
RegressionAsClassifier (class in mvpa2.clfs.meta)
(class in mvpa2.clfs.warehouse)
RegressionAsClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta)
(class in mvpa2.measures.base)
RegressionStatistics (class in mvpa2.clfs.base)
(class in mvpa2.clfs.transerror)
relative_rms_error() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
RelativeTime (class in mvpa2.base.verbosity)
release notes, [1]
releases
reload() (mvpa2.base.config.ConfigManager method)
(mvpa2.base.ConfigManager method)
relvar_per_ic (mvpa2.misc.fsl.melodic.MelodicResults attribute)
remove_invariant_features() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
remove_nonfinite_features() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
repeat_cluster_vals() (in module mvpa2.algorithms.group_clusterthr)
RepeatedMeasure (class in mvpa2.measures.base)
Repeater (class in mvpa2.featsel.rfe)
(class in mvpa2.generators.base)
replace() (mvpa2.base.report.datetime method)
Report (class in mvpa2.base.report)
reposition_hemisphere_pairs() (in module mvpa2.support.nibabel.surf)
repredict() (mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.testing.clfs.Classifier method)
required software
resample() (in module mvpa2.mappers.filters)
reseed_rng() (in module mvpa2.testing)
(in module mvpa2.testing.datasets)
(in module mvpa2.testing.tools)
reset() (mvpa2.algorithms.hyperalignment.ClassWithCollections method)
(mvpa2.algorithms.hyperalignment.ConditionalAttribute method)
(mvpa2.algorithms.searchlight_hyperalignment.ClassWithCollections method)
(mvpa2.base.attributes.ConditionalAttribute method)
(mvpa2.base.attributes.IndexedCollectable method)
(mvpa2.base.learner.ConditionalAttribute method)
(mvpa2.base.node.ClassWithCollections method)
(mvpa2.base.node.ConditionalAttribute method)
(mvpa2.base.param.IndexedCollectable method)
(mvpa2.base.state.ClassWithCollections method)
(mvpa2.base.state.Collection method)
(mvpa2.base.state.ConditionalAttribute method)
(mvpa2.base.state.IndexedCollectable method)
(mvpa2.clfs.base.ConditionalAttribute method)
(mvpa2.clfs.blr.ConditionalAttribute method)
(mvpa2.clfs.gda.ConditionalAttribute method)
(mvpa2.clfs.gnb.ConditionalAttribute method)
(mvpa2.clfs.gpr.ConditionalAttribute method)
(mvpa2.clfs.gpr.GeneralizedLinearKernel method)
(mvpa2.clfs.gpr.SquaredExponentialKernel method)
(mvpa2.clfs.knn.ConditionalAttribute method)
(mvpa2.clfs.mass.ConditionalAttribute method)
(mvpa2.clfs.meta.ClassWithCollections method)
(mvpa2.clfs.meta.ConditionalAttribute method)
(mvpa2.clfs.plr.ConditionalAttribute method)
(mvpa2.clfs.smlr.ConditionalAttribute method)
(mvpa2.clfs.stats.ClassWithCollections method)
(mvpa2.clfs.stats.ConditionalAttribute method)
(mvpa2.clfs.transerror.ClassWithCollections method)
(mvpa2.clfs.transerror.ConditionalAttribute method)
(mvpa2.clfs.transerror.SummaryStatistics method)
(mvpa2.clfs.warehouse.GeneralizedLinearKernel method)
(mvpa2.clfs.warehouse.SquaredExponentialKernel method)
(mvpa2.featsel.base.ConditionalAttribute method)
(mvpa2.featsel.helpers.ClassWithCollections method)
(mvpa2.featsel.helpers.ConditionalAttribute method)
(mvpa2.featsel.ifs.ConditionalAttribute method)
(mvpa2.featsel.rfe.ConditionalAttribute method)
(mvpa2.kernels.base.ClassWithCollections method)
(mvpa2.kernels.np.ConditionalAttribute method)
(mvpa2.kernels.np.GeneralizedLinearKernel method)
(mvpa2.kernels.np.SquaredExponentialKernel method)
(mvpa2.measures.base.ConditionalAttribute method)
(mvpa2.measures.searchlight.ConditionalAttribute method)
(mvpa2.misc.transformers.ClassWithCollections method)
(mvpa2.misc.transformers.ConditionalAttribute method)
reset_changed_temporarily() (mvpa2.base.state.ConditionalAttributesCollection method)
reset_value() (mvpa2.algorithms.group_clusterthr.Parameter method)
(mvpa2.algorithms.hyperalignment.Parameter method)
(mvpa2.algorithms.searchlight_hyperalignment.Parameter method)
(mvpa2.base.param.Parameter method)
(mvpa2.base.state.ParameterCollection method)
(mvpa2.clfs.base.Parameter method)
(mvpa2.clfs.gda.Parameter method)
(mvpa2.clfs.glmnet.Parameter method)
(mvpa2.clfs.gnb.Parameter method)
(mvpa2.clfs.gpr.Parameter method)
(mvpa2.clfs.meta.Parameter method)
(mvpa2.clfs.smlr.Parameter method)
(mvpa2.kernels.base.Parameter method)
(mvpa2.kernels.libsvm.Parameter method)
(mvpa2.kernels.np.Parameter method)
(mvpa2.kernels.sg.Parameter method)
(mvpa2.mappers.detrend.Parameter method)
(mvpa2.mappers.filters.Parameter method)
(mvpa2.mappers.fx.Parameter method)
(mvpa2.mappers.glm.Parameter method)
(mvpa2.mappers.procrustean.Parameter method)
(mvpa2.measures.rsa.Parameter method)
resize() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
resolution (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
(mvpa2.base.report.datetime attribute)
retrain() (mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.testing.clfs.Classifier method)
reuse_absolute_path() (in module mvpa2.atlases.base)
(in module mvpa2.atlases.fsl)
(in module mvpa2.atlases.warehouse)
(in module mvpa2.misc.support)
reuse_neighbors (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute)
(mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute)
reverse() (mvpa2.algorithms.hyperalignment.ChainMapper method)
(mvpa2.datasets.base.ChainMapper method)
(mvpa2.datasets.cosmo.ChainMapper method)
(mvpa2.mappers.base.ChainMapper method)
(mvpa2.mappers.base.Mapper method)
(mvpa2.mappers.boxcar.Mapper method)
(mvpa2.mappers.detrend.Mapper method)
(mvpa2.mappers.filters.Mapper method)
(mvpa2.mappers.flatten.ChainMapper method)
(mvpa2.mappers.flatten.Mapper method)
(mvpa2.mappers.fx.Mapper method)
(mvpa2.mappers.fxy.Mapper method)
(mvpa2.mappers.glm.Mapper method)
(mvpa2.mappers.mdp_adaptor.Mapper method)
(mvpa2.mappers.projection.Mapper method)
(mvpa2.mappers.shape.Mapper method)
(mvpa2.mappers.skl_adaptor.Mapper method)
(mvpa2.mappers.slicing.Mapper method)
(mvpa2.mappers.som.Mapper method)
(mvpa2.mappers.wavelet.Mapper method)
(mvpa2.mappers.zscore.Mapper method)
(mvpa2.measures.searchlight.ChainMapper method)
(mvpa2.misc.surfing.volgeom.ChainMapper method)
reverse1() (mvpa2.algorithms.benchmarks.hyperalignment.BoxcarMapper method)
(mvpa2.algorithms.benchmarks.hyperalignment.IdentityMapper method)
(mvpa2.algorithms.group_clusterthr.IdentityMapper method)
(mvpa2.algorithms.hyperalignment.ChainMapper method)
(mvpa2.datasets.base.ChainMapper method)
(mvpa2.datasets.cosmo.ChainMapper method)
(mvpa2.datasets.eventrelated.BoxcarMapper method)
(mvpa2.featsel.base.FeatureSelection method)
(mvpa2.mappers.base.ChainMapper method)
(mvpa2.mappers.base.IdentityMapper method)
(mvpa2.mappers.base.Mapper method)
(mvpa2.mappers.boxcar.BoxcarMapper method)
(mvpa2.mappers.boxcar.Mapper method)
(mvpa2.mappers.detrend.Mapper method)
(mvpa2.mappers.filters.Mapper method)
(mvpa2.mappers.flatten.ChainMapper method)
(mvpa2.mappers.flatten.Mapper method)
(mvpa2.mappers.fx.Mapper method)
(mvpa2.mappers.fxy.Mapper method)
(mvpa2.mappers.glm.Mapper method)
(mvpa2.mappers.mdp_adaptor.Mapper method)
(mvpa2.mappers.projection.Mapper method)
(mvpa2.mappers.shape.Mapper method)
(mvpa2.mappers.skl_adaptor.Mapper method)
(mvpa2.mappers.slicing.Mapper method)
(mvpa2.mappers.som.Mapper method)
(mvpa2.mappers.wavelet.Mapper method)
(mvpa2.mappers.zscore.Mapper method)
(mvpa2.measures.searchlight.ChainMapper method)
(mvpa2.misc.plot.erp.BoxcarMapper method)
(mvpa2.misc.surfing.volgeom.ChainMapper method)
reverse_rank_order() (in module mvpa2.misc.transformers)
review
RFE (class in mvpa2.featsel.rfe)
rfe_history_to_maps() (in module mvpa2.misc.support)
RidgeReg (class in mvpa2.clfs.ridge)
rms_error() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
RNG
ROCCurve (class in mvpa2.clfs.transerror)
rocs (mvpa2.clfs.transerror.ROCCurve attribute)
roi_ids (mvpa2.measures.searchlight.BaseSearchlight attribute)
root_mean_power_fx() (in module mvpa2.clfs.transerror)
(in module mvpa2.misc.errorfx)
rotate() (mvpa2.support.nibabel.surf.Surface method)
RPy, [1]
Rrx() (in module mvpa2.clfs.mass)
Rrx2() (in module mvpa2.clfs.enet)
(in module mvpa2.clfs.glmnet)
(in module mvpa2.clfs.lars)
(in module mvpa2.clfs.mass)
rsa_fmri
run() (in module mvpa2.tests)
run_tests_using_nose() (in module mvpa2.tests)
run_voxel_selection() (in module mvpa2.misc.surfing.surf_voxel_selection)
rv_semifrozen (class in mvpa2.clfs.stats)

S

S (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
safe_str() (in module mvpa2.base.dochelpers)
SafeConfigParser (class in mvpa2.base.config)
same_geometry() (mvpa2.misc.surfing.volgeom.VolGeom method)
same_mask() (mvpa2.misc.surfing.volgeom.VolGeom method)
same_shape() (mvpa2.misc.surfing.volgeom.VolGeom method)
same_states() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
same_topology() (mvpa2.support.nibabel.surf.Surface method)
SameSignClassifier (class in mvpa2.testing.clfs)
Sample
Sample attribute
sample_loser_measure() (in module mvpa2.measures.winner)
sample_winner_measure() (in module mvpa2.measures.winner)
SampleAttribute (class in mvpa2.base.collections)
SampleAttributes (class in mvpa2.misc.io)
(class in mvpa2.misc.io.base)
SampleAttributesCollection (class in mvpa2.base.collections)
(class in mvpa2.base.dataset)
(class in mvpa2.base.node)
(class in mvpa2.datasets.gifti)
(class in mvpa2.datasets.niml)
(class in mvpa2.generators.base)
samples (mvpa2.datasets.base.HollowSamples attribute)
(mvpa2.testing.datasets.HollowSamples attribute)
SampleSliceMapper (class in mvpa2.mappers.slicing)
SamplesLookup (class in mvpa2.kernels.base)
(class in mvpa2.misc.sampleslookup)
save() (in module mvpa2.base.dataset)
(mvpa2.base.ConfigManager method)
(mvpa2.base.config.ConfigManager method)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.base.report.Report method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
saveload_warehouse() (in module mvpa2.testing.datasets)
savemat() (in module mvpa2.datasets.cosmo)
scatter
scatter_neighborhoods() (in module mvpa2.misc.neighborhood)
SciPy
Searchlight
searchlight, [1], [2], [3]
Searchlight (class in mvpa2.datasets.cosmo)
(class in mvpa2.measures.searchlight)
SearchlightHyperalignment (class in mvpa2.algorithms.searchlight_hyperalignment)
second (mvpa2.base.report.datetime attribute)
second_axis_mean() (in module mvpa2.misc.transformers)
seconds2prettystring() (in module mvpa2.base.progress)
(in module mvpa2.misc.surfing.surf_voxel_selection)
seed() (in module mvpa2)
seek() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
seekable() (mvpa2.support.nibabel.afni_niml.BytesIO method)
select
select() (mvpa2.algorithms.group_clusterthr.Dataset method)
(mvpa2.algorithms.hyperalignment.Dataset method)
(mvpa2.clfs.base.Dataset method)
(mvpa2.clfs.glmnet.Dataset method)
(mvpa2.clfs.gpr.Dataset method)
(mvpa2.clfs.knn.Dataset method)
(mvpa2.clfs.lars.Dataset method)
(mvpa2.clfs.meta.Dataset method)
(mvpa2.clfs.plr.Dataset method)
(mvpa2.clfs.smlr.Dataset method)
(mvpa2.clfs.stats.Dataset method)
(mvpa2.clfs.transerror.Dataset method)
(mvpa2.datasets.base.Dataset method)
(mvpa2.datasets.cosmo.Dataset method)
(mvpa2.datasets.eeglab.Dataset method)
(mvpa2.datasets.eep.Dataset method)
(mvpa2.datasets.eventrelated.Dataset method)
(mvpa2.datasets.formats.Dataset method)
(mvpa2.datasets.gifti.Dataset method)
(mvpa2.datasets.miscfx.Dataset method)
(mvpa2.datasets.mri.Dataset method)
(mvpa2.datasets.niml.Dataset method)
(mvpa2.mappers.filters.Dataset method)
(mvpa2.mappers.fx.Dataset method)
(mvpa2.mappers.fxy.Dataset method)
(mvpa2.mappers.glm.Dataset method)
(mvpa2.mappers.shape.Dataset method)
(mvpa2.mappers.zscore.Dataset method)
(mvpa2.measures.anova.Dataset method)
(mvpa2.measures.base.Dataset method)
(mvpa2.measures.corrcoef.Dataset method)
(mvpa2.measures.irelief.Dataset method)
(mvpa2.measures.noiseperturbation.Dataset method)
(mvpa2.measures.rsa.Dataset method)
(mvpa2.measures.searchlight.Dataset method)
(mvpa2.measures.statsmodels_adaptor.Dataset method)
(mvpa2.measures.winner.Dataset method)
(mvpa2.misc.data_generators.Dataset method)
(mvpa2.misc.plot.flat_surf.Dataset method)
(mvpa2.testing.clfs.Dataset method)
(mvpa2.testing.datasets.Dataset method)
select_samples() (mvpa2.misc.bv.base.ColumnData method)
(mvpa2.misc.bv.ColumnData method)
(mvpa2.misc.fsl.ColumnData method)
(mvpa2.misc.fsl.base.ColumnData method)
(mvpa2.misc.io.ColumnData method)
(mvpa2.misc.io.base.ColumnData method)
selection_strategy (mvpa2.generators.partition.Partitioner attribute)
selector (mvpa2.featsel.base.SplitSamplesProbabilityMapper attribute)
selectors (mvpa2.featsel.base.CombinedFeatureSelection attribute)
self-organizing map
Sensitivity
sensitivity, [1], [2]
Sensitivity (class in mvpa2.clfs.enet)
(class in mvpa2.clfs.glmnet)
(class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.lars)
(class in mvpa2.clfs.plr)
(class in mvpa2.clfs.smlr)
(class in mvpa2.featsel.rfe)
(class in mvpa2.measures.base)
Sensitivity Map
sensitivity_analyzer (mvpa2.clfs.warehouse.SensitivityBasedFeatureSelection attribute)
(mvpa2.featsel.base.SensitivityBasedFeatureSelection attribute)
(mvpa2.featsel.base.SplitSamplesProbabilityMapper attribute)
SensitivityBasedFeatureSelection (class in mvpa2.clfs.warehouse)
(class in mvpa2.featsel.base)
SensorLocations (class in mvpa2.misc.io)
(class in mvpa2.misc.io.base)
sentence_end_re (mvpa2.base.state.TextWrapper attribute)
SequenceCollectable (class in mvpa2.base.collections)
SequenceStats (class in mvpa2.datasets.miscfx)
set() (mvpa2.base.config.SafeConfigParser method)
set_active_from_string() (mvpa2.base.verbosity.SetLogger method)
set_attr() (mvpa2.algorithms.group_clusterthr.Dataset method)
(mvpa2.algorithms.hyperalignment.Dataset method)
(mvpa2.clfs.base.Dataset method)
(mvpa2.clfs.glmnet.Dataset method)
(mvpa2.clfs.gpr.Dataset method)
(mvpa2.clfs.knn.Dataset method)
(mvpa2.clfs.lars.Dataset method)
(mvpa2.clfs.meta.Dataset method)
(mvpa2.clfs.plr.Dataset method)
(mvpa2.clfs.smlr.Dataset method)
(mvpa2.clfs.stats.Dataset method)
(mvpa2.clfs.transerror.Dataset method)
(mvpa2.datasets.base.Dataset method)
(mvpa2.datasets.cosmo.Dataset method)
(mvpa2.datasets.eeglab.Dataset method)
(mvpa2.datasets.eep.Dataset method)
(mvpa2.datasets.eventrelated.Dataset method)
(mvpa2.datasets.formats.Dataset method)
(mvpa2.datasets.gifti.Dataset method)
(mvpa2.datasets.miscfx.Dataset method)
(mvpa2.datasets.mri.Dataset method)
(mvpa2.datasets.niml.Dataset method)
(mvpa2.mappers.filters.Dataset method)
(mvpa2.mappers.fx.Dataset method)
(mvpa2.mappers.fxy.Dataset method)
(mvpa2.mappers.glm.Dataset method)
(mvpa2.mappers.shape.Dataset method)
(mvpa2.mappers.zscore.Dataset method)
(mvpa2.measures.anova.Dataset method)
(mvpa2.measures.base.Dataset method)
(mvpa2.measures.corrcoef.Dataset method)
(mvpa2.measures.irelief.Dataset method)
(mvpa2.measures.noiseperturbation.Dataset method)
(mvpa2.measures.rsa.Dataset method)
(mvpa2.measures.searchlight.Dataset method)
(mvpa2.measures.statsmodels_adaptor.Dataset method)
(mvpa2.measures.winner.Dataset method)
(mvpa2.misc.data_generators.Dataset method)
(mvpa2.misc.plot.flat_surf.Dataset method)
(mvpa2.testing.clfs.Dataset method)
(mvpa2.testing.datasets.Dataset method)
set_coordT() (mvpa2.atlases.base.XMLBasedAtlas method)
(mvpa2.atlases.fsl.XMLBasedAtlas method)
(mvpa2.atlases.warehouse.XMLBasedAtlas method)
set_data_dtype() (mvpa2.misc.plot.lightbox.SpatialImage method)
set_default() (mvpa2.misc.cmdline.OptionParser method)
set_defaults() (mvpa2.misc.cmdline.OptionParser method)
set_distance() (mvpa2.atlases.base.ReferencesAtlas method)
(mvpa2.atlases.ReferencesAtlas method)
(mvpa2.atlases.warehouse.ReferencesAtlas method)
set_feature_matrix() (mvpa2.kernels.sg.RealFeatures method)
set_feature_vector() (mvpa2.kernels.sg.RealFeatures method)
set_filename() (mvpa2.misc.plot.lightbox.SpatialImage method)
set_hyperparameters() (mvpa2.clfs.blr.BLR method)
(mvpa2.clfs.gpr.GPR method)
(mvpa2.clfs.gpr.SquaredExponentialKernel method)
(mvpa2.clfs.warehouse.BLR method)
(mvpa2.clfs.warehouse.GPR method)
(mvpa2.clfs.warehouse.SquaredExponentialKernel method)
(mvpa2.kernels.np.Matern_3_2Kernel method)
(mvpa2.kernels.np.RationalQuadraticKernel method)
(mvpa2.kernels.np.SquaredExponentialKernel method)
set_labels_map() (mvpa2.clfs.base.ConfusionMatrix method)
(mvpa2.clfs.transerror.ConfusionMatrix method)
set_length_check() (mvpa2.base.collections.SequenceCollectable method)
(mvpa2.base.collections.UniformLengthCollection method)
set_num_features() (mvpa2.kernels.sg.RealFeatures method)
set_num_vectors() (mvpa2.kernels.sg.RealFeatures method)
set_output_dataset_attributes() (mvpa2.datasets.cosmo.CosmoQueryEngine method)
set_postproc() (mvpa2.base.learner.Node method)
(mvpa2.base.node.Node method)
(mvpa2.clfs.transerror.Node method)
(mvpa2.generators.base.Node method)
(mvpa2.generators.partition.Node method)
(mvpa2.generators.permutation.Node method)
(mvpa2.generators.resampling.Node method)
(mvpa2.generators.splitters.Node method)
(mvpa2.mappers.fx.Node method)
(mvpa2.mappers.slicing.Node method)
(mvpa2.measures.base.Node method)
set_process_default_values() (mvpa2.misc.cmdline.OptionParser method)
set_reference_level() (mvpa2.atlases.base.ReferencesAtlas method)
(mvpa2.atlases.ReferencesAtlas method)
(mvpa2.atlases.warehouse.ReferencesAtlas method)
set_space() (mvpa2.base.learner.Node method)
(mvpa2.base.node.Node method)
(mvpa2.clfs.transerror.Node method)
(mvpa2.generators.base.Node method)
(mvpa2.generators.partition.Node method)
(mvpa2.generators.permutation.Node method)
(mvpa2.generators.resampling.Node method)
(mvpa2.generators.splitters.Node method)
(mvpa2.mappers.fx.Node method)
(mvpa2.mappers.slicing.Node method)
(mvpa2.measures.base.Node method)
set_title() (mvpa2.misc.cmdline.OptionGroup method)
set_underlay() (mvpa2.misc.plot.flat_surf.FlatSurfacePlotter method)
set_usage() (mvpa2.misc.cmdline.OptionParser method)
SetLogger (class in mvpa2.base.verbosity)
setnewidcode() (in module mvpa2.support.nibabel.afni_niml)
sets (mvpa2.clfs.transerror.SummaryStatistics attribute)
settings
setup_module() (in module mvpa2.clfs.sg)
(in module mvpa2.tests)
SGKernel (class in mvpa2.kernels.sg)
shape (mvpa2.algorithms.benchmarks.hyperalignment.FlattenMapper attribute)
(mvpa2.base.dataset.AttrDataset attribute)
(mvpa2.base.learner.AttrDataset attribute)
(mvpa2.datasets.base.AttrDataset attribute)
(mvpa2.datasets.base.FlattenMapper attribute)
(mvpa2.datasets.base.HollowSamples attribute)
(mvpa2.datasets.cosmo.FlattenMapper attribute)
(mvpa2.datasets.eeglab.FlattenMapper attribute)
(mvpa2.datasets.eventrelated.FlattenMapper attribute)
(mvpa2.datasets.gifti.AttrDataset attribute)
(mvpa2.datasets.mri.FlattenMapper attribute)
(mvpa2.featsel.helpers.AttrDataset attribute)
(mvpa2.mappers.flatten.FlattenMapper attribute)
(mvpa2.measures.base.AttrDataset attribute)
(mvpa2.misc.plot.lightbox.SpatialImage attribute)
(mvpa2.misc.surfing.queryengine.AttrDataset attribute)
(mvpa2.misc.surfing.volgeom.VolGeom attribute)
(mvpa2.testing.datasets.HollowSamples attribute)
Shogun
short_description() (mvpa2.algorithms.group_clusterthr.EnsureChoice method)
(mvpa2.algorithms.group_clusterthr.EnsureRange method)
(mvpa2.algorithms.hyperalignment.AltConstraints method)
(mvpa2.algorithms.hyperalignment.Constraint method)
(mvpa2.algorithms.hyperalignment.Constraints method)
(mvpa2.algorithms.hyperalignment.EnsureBool method)
(mvpa2.algorithms.hyperalignment.EnsureChoice method)
(mvpa2.algorithms.hyperalignment.EnsureDType method)
(mvpa2.algorithms.hyperalignment.EnsureListOf method)
(mvpa2.algorithms.hyperalignment.EnsureNone method)
(mvpa2.algorithms.hyperalignment.EnsureRange method)
(mvpa2.algorithms.hyperalignment.EnsureStr method)
(mvpa2.algorithms.hyperalignment.EnsureTupleOf method)
(mvpa2.algorithms.searchlight_hyperalignment.AltConstraints method)
(mvpa2.algorithms.searchlight_hyperalignment.Constraint method)
(mvpa2.algorithms.searchlight_hyperalignment.Constraints method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureBool method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureChoice method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureDType method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureListOf method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureNone method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureRange method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureStr method)
(mvpa2.algorithms.searchlight_hyperalignment.EnsureTupleOf method)
(mvpa2.base.constraints.AltConstraints method)
(mvpa2.base.constraints.Constraint method)
(mvpa2.base.constraints.Constraints method)
(mvpa2.base.constraints.EnsureBool method)
(mvpa2.base.constraints.EnsureChoice method)
(mvpa2.base.constraints.EnsureDType method)
(mvpa2.base.constraints.EnsureListOf method)
(mvpa2.base.constraints.EnsureNone method)
(mvpa2.base.constraints.EnsureRange method)
(mvpa2.base.constraints.EnsureStr method)
(mvpa2.base.constraints.EnsureTupleOf method)
(mvpa2.clfs.gda.EnsureChoice method)
(mvpa2.clfs.glmnet.AltConstraints method)
(mvpa2.clfs.glmnet.Constraint method)
(mvpa2.clfs.glmnet.Constraints method)
(mvpa2.clfs.glmnet.EnsureBool method)
(mvpa2.clfs.glmnet.EnsureChoice method)
(mvpa2.clfs.glmnet.EnsureDType method)
(mvpa2.clfs.glmnet.EnsureListOf method)
(mvpa2.clfs.glmnet.EnsureNone method)
(mvpa2.clfs.glmnet.EnsureRange method)
(mvpa2.clfs.glmnet.EnsureStr method)
(mvpa2.clfs.glmnet.EnsureTupleOf method)
(mvpa2.clfs.gnb.EnsureChoice method)
(mvpa2.clfs.gpr.EnsureNone method)
(mvpa2.clfs.gpr.EnsureRange method)
(mvpa2.clfs.smlr.AltConstraints method)
(mvpa2.clfs.smlr.Constraint method)
(mvpa2.clfs.smlr.Constraints method)
(mvpa2.clfs.smlr.EnsureBool method)
(mvpa2.clfs.smlr.EnsureChoice method)
(mvpa2.clfs.smlr.EnsureDType method)
(mvpa2.clfs.smlr.EnsureListOf method)
(mvpa2.clfs.smlr.EnsureNone method)
(mvpa2.clfs.smlr.EnsureRange method)
(mvpa2.clfs.smlr.EnsureStr method)
(mvpa2.clfs.smlr.EnsureTupleOf method)
(mvpa2.kernels.np.EnsureListOf method)
(mvpa2.mappers.filters.EnsureChoice method)
(mvpa2.mappers.filters.EnsureNone method)
(mvpa2.mappers.fx.AltConstraints method)
(mvpa2.mappers.fx.Constraint method)
(mvpa2.mappers.fx.Constraints method)
(mvpa2.mappers.fx.EnsureBool method)
(mvpa2.mappers.fx.EnsureChoice method)
(mvpa2.mappers.fx.EnsureDType method)
(mvpa2.mappers.fx.EnsureListOf method)
(mvpa2.mappers.fx.EnsureNone method)
(mvpa2.mappers.fx.EnsureRange method)
(mvpa2.mappers.fx.EnsureStr method)
(mvpa2.mappers.fx.EnsureTupleOf method)
(mvpa2.mappers.procrustean.EnsureChoice method)
(mvpa2.measures.rsa.EnsureChoice method)
Sifter (class in mvpa2.generators.base)
SigmoidLSKernel (class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.libsvm)
SillySensitivityAnalyzer (class in mvpa2.testing.clfs)
Similarity (class in mvpa2.clfs.similarity)
simple_hrf_dataset() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
SimpleSOMMapper
(class in mvpa2.mappers.som)
SimpleStatBaseSearchlight (class in mvpa2.measures.gnbsearchlight)
(class in mvpa2.measures.nnsearchlight)
sin_modulated() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
single_gamma_hrf() (in module mvpa2.misc.data_generators)
(in module mvpa2.misc.fx)
(in module mvpa2.testing.datasets)
single_or_plural() (in module mvpa2.base.dochelpers)
SingleDimensionSimilarity (class in mvpa2.clfs.similarity)
skip_if_no_external() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
skipif() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
skl_biclusters() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_blobs() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_boston() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_breast_cancer() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_checkerboard() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_circles() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_classification() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_diabetes() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_digits() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_friedman1() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_friedman2() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_friedman3() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_gaussian_quantiles() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_hastie_10_2() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_iris() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_lfw_pairs() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_lfw_people() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_linnerud() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_low_rank_matrix() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_mlcomp() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_moons() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_multilabel_classification() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_regression() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_s_curve() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_sparse_coded_signal() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_sparse_spd_matrix() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_sparse_uncorrelated() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_spd_matrix() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
skl_swiss_roll() (in module mvpa2.datasets.sources)
(in module mvpa2.datasets.sources.skl_data)
sklElasticNet (in module mvpa2.clfs.warehouse)
sklExtraTreesClassifier (in module mvpa2.clfs.warehouse)
sklExtraTreesRegression (in module mvpa2.clfs.warehouse)
sklLars (in module mvpa2.clfs.warehouse)
sklLassoLars (in module mvpa2.clfs.warehouse)
sklLassoLarsIC (in module mvpa2.clfs.warehouse)
sklLDA (in module mvpa2.clfs.warehouse)
SKLLearnerAdapter (class in mvpa2.clfs.skl)
(class in mvpa2.clfs.warehouse)
sklPLSRegression (in module mvpa2.clfs.warehouse)
sklRandomForestClassifier (in module mvpa2.clfs.warehouse)
sklRandomForestRegression (in module mvpa2.clfs.warehouse)
SKLTransformer (class in mvpa2.mappers.skl_adaptor)
SLcho_solve() (in module mvpa2.clfs.gpr)
SLcholesky() (in module mvpa2.clfs.gpr)
slicearg (mvpa2.featsel.base.SliceMapper attribute)
(mvpa2.mappers.slicing.SliceMapper attribute)
SliceMapper (class in mvpa2.featsel.base)
(class in mvpa2.mappers.slicing)
SmartVersion (class in mvpa2.base.externals)
(class in mvpa2.misc.support)
SMLR
(class in mvpa2.clfs.smlr)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
SMLRWeights (class in mvpa2.clfs.smlr)
(class in mvpa2.clfs.warehouse)
smodes (mvpa2.misc.fsl.melodic.MelodicResults attribute)
solve() (mvpa2.clfs.gpr.ModelSelector method)
(mvpa2.clfs.model_selector.ModelSelector method)
SOM
sorted (mvpa2.algorithms.searchlight_hyperalignment.IndexQueryEngine attribute)
(mvpa2.measures.gnbsearchlight.IndexQueryEngine attribute)
(mvpa2.measures.nnsearchlight.IndexQueryEngine attribute)
(mvpa2.measures.searchlight.IndexQueryEngine attribute)
(mvpa2.misc.data_generators.IndexQueryEngine attribute)
(mvpa2.misc.neighborhood.IndexQueryEngine attribute)
(mvpa2.testing.datasets.IndexQueryEngine attribute)
source (mvpa2.atlases.base.PyMVPAAtlas attribute)
(mvpa2.atlases.fsl.FSLAtlas attribute)
(mvpa2.atlases.warehouse.FSLAtlas attribute)
(mvpa2.atlases.warehouse.PyMVPAAtlas attribute)
(mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary attribute)
source package
source2nearest_target() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
space (mvpa2.atlases.base.PyMVPAAtlas attribute)
(mvpa2.atlases.warehouse.PyMVPAAtlas attribute)
(mvpa2.base.learner.Node attribute)
(mvpa2.base.node.Node attribute)
(mvpa2.clfs.transerror.Node attribute)
(mvpa2.generators.base.Node attribute)
(mvpa2.generators.partition.Node attribute)
(mvpa2.generators.permutation.Node attribute)
(mvpa2.generators.resampling.Node attribute)
(mvpa2.generators.splitters.Node attribute)
(mvpa2.mappers.fx.Node attribute)
(mvpa2.mappers.slicing.Node attribute)
(mvpa2.measures.base.Node attribute)
space_flavor (mvpa2.atlases.base.PyMVPAAtlas attribute)
(mvpa2.atlases.warehouse.PyMVPAAtlas attribute)
spaceT (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
SpaceTransformation (class in mvpa2.atlases.base)
(class in mvpa2.atlases.warehouse)
sparse2full() (in module mvpa2.support.nibabel.afni_niml_dset)
Spatial Discrimination Map (SDM)
SpatialImage (class in mvpa2.misc.plot.lightbox)
Sphere (class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.measures.gnbsearchlight)
(class in mvpa2.measures.nnsearchlight)
(class in mvpa2.measures.searchlight)
(class in mvpa2.misc.neighborhood)
(class in mvpa2.misc.surfing.volgeom)
sphere_gnbsearchlight() (in module mvpa2.measures.gnbsearchlight)
sphere_m1nnsearchlight() (in module mvpa2.measures.nnsearchlight)
sphere_searchlight() (in module mvpa2.measures.searchlight)
split_by_connected_components() (mvpa2.support.nibabel.surf.Surface method)
split_by_feature_attribute() (in module mvpa2.base.dataset)
split_by_sample_attribute() (in module mvpa2.base.dataset)
(in module mvpa2.featsel.base)
split_comma_semicolon_lists() (in module mvpa2.misc.cmdline)
split_kwargs() (in module mvpa2.misc.args)
splitattr (mvpa2.generators.partition.Partitioner attribute)
SplitClassifier (class in mvpa2.clfs.meta)
(class in mvpa2.clfs.warehouse)
SplitRFE (class in mvpa2.clfs.warehouse)
(class in mvpa2.featsel.rfe)
SplitSamplesProbabilityMapper (class in mvpa2.featsel.base)
Splitter (class in mvpa2.algorithms.benchmarks.hyperalignment)
(class in mvpa2.clfs.meta)
(class in mvpa2.featsel.rfe)
(class in mvpa2.generators.splitters)
(class in mvpa2.mappers.filters)
(class in mvpa2.measures.base)
(class in mvpa2.misc.plot)
(class in mvpa2.misc.plot.base)
(class in mvpa2.viz)
splitter (mvpa2.clfs.meta.SplitClassifier attribute)
(mvpa2.clfs.warehouse.SplitClassifier attribute)
(mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
(mvpa2.measures.base.CrossValidation attribute)
(mvpa2.measures.base.TransferMeasure attribute)
(mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute)
(mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute)
squared_euclidean_distance() (in module mvpa2.clfs.distance)
(in module mvpa2.clfs.knn)
(in module mvpa2.clfs.similarity)
(in module mvpa2.kernels.np)
(in module mvpa2.measures.nnsearchlight)
(in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
SquaredExponentialKernel (class in mvpa2.clfs.gpr)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.kernels.np)
squareform() (in module mvpa2.measures.rsa)
stack_by_unique_feature_attribute() (in module mvpa2.base.dataset)
stack_by_unique_sample_attribute() (in module mvpa2.base.dataset)
standard_option_list (mvpa2.misc.cmdline.OptionParser attribute)
start() (mvpa2.algorithms.searchlight_hyperalignment.ProgressBar method)
(mvpa2.base.progress.ProgressBar method)
(mvpa2.measures.searchlight.ProgressBar method)
(mvpa2.misc.surfing.surf_voxel_selection.ProgressBar method)
(mvpa2.misc.surfing.volsurf.ProgressBar method)
StaticFeatureSelection (class in mvpa2.datasets.base)
(class in mvpa2.datasets.cosmo)
(class in mvpa2.featsel.base)
(class in mvpa2.featsel.ifs)
(class in mvpa2.mappers.flatten)
(class in mvpa2.measures.searchlight)
StaticMeasure (class in mvpa2.measures.base)
StaticProjectionMapper (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.mappers.staticprojection)
Statistical Discrimination Map (SDM)
Statistical Learning
statistical testing, [1]
stats (mvpa2.clfs.transerror.SummaryStatistics attribute)
StatsmodelsGLMMapper (class in mvpa2.mappers.glm)
steal_feature_matrix() (mvpa2.kernels.sg.RealFeatures method)
steps (mvpa2.featsel.base.NBackHistoryStopCrit attribute)
(mvpa2.featsel.helpers.NBackHistoryStopCrit attribute)
(mvpa2.featsel.helpers.NStepsStopCrit attribute)
(mvpa2.featsel.ifs.NBackHistoryStopCrit attribute)
(mvpa2.featsel.rfe.NBackHistoryStopCrit attribute)
stopping_criterion (mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
StoppingCriterion (class in mvpa2.featsel.helpers)
STORE_ACTIONS (mvpa2.misc.cmdline.Option attribute)
StreamlineSimilarity (class in mvpa2.clfs.similarity)
string2rawniml() (in module mvpa2.support.nibabel.afni_niml)
StringIO (class in mvpa2.base.dochelpers)
(class in mvpa2.base.info)
(class in mvpa2.clfs.transerror)
strip_nibabel() (in module mvpa2.datasets.mri)
strip_strid() (in module mvpa2.base.dochelpers)
(in module mvpa2.testing)
(in module mvpa2.testing.tools)
StripBoundariesSamples (class in mvpa2.mappers.slicing)
strptime() (mvpa2.base.report.datetime method)
sub() (in module mvpa2.misc.io.base)
sub_surface() (mvpa2.support.nibabel.surf.Surface method)
subtract() (mvpa2.algorithms.group_clusterthr.Counter method)
subtract_mean() (in module mvpa2.mappers.fx)
(in module mvpa2.misc.transformers)
subtract_mean_feature() (in module mvpa2.mappers.fx)
suggested software
sum() (in module mvpa2.clfs.gda)
(in module mvpa2.clfs.gnb)
sum_duplicates() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
sum_of_abs() (in module mvpa2.mappers.fx)
(in module mvpa2.misc.transformers)
sum_sample() (in module mvpa2.mappers.fx)
summaries (mvpa2.clfs.transerror.SummaryStatistics attribute)
summary() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.clfs.base.Classifier method)
(mvpa2.clfs.blr.Classifier method)
(mvpa2.clfs.enet.Classifier method)
(mvpa2.clfs.gda.Classifier method)
(mvpa2.clfs.glmnet.Classifier method)
(mvpa2.clfs.gnb.Classifier method)
(mvpa2.clfs.gpr.Classifier method)
(mvpa2.clfs.knn.Classifier method)
(mvpa2.clfs.lars.Classifier method)
(mvpa2.clfs.mass.Classifier method)
(mvpa2.clfs.meta.Classifier method)
(mvpa2.clfs.meta.CombinedClassifier method)
(mvpa2.clfs.meta.ProxyClassifier method)
(mvpa2.clfs.meta.TreeClassifier method)
(mvpa2.clfs.plr.Classifier method)
(mvpa2.clfs.ridge.Classifier method)
(mvpa2.clfs.smlr.Classifier method)
(mvpa2.clfs.svm.SVM method)
(mvpa2.clfs.warehouse.SVM method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.featsel.rfe.ProxyClassifier method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
(mvpa2.testing.clfs.Classifier method)
(mvpa2.testing.clfs.SVM method)
summary_targets() (in module mvpa2.datasets.miscfx)
(mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
SummaryStatistics (class in mvpa2.clfs.transerror)
sumofabs_sample() (in module mvpa2.mappers.fx)
Supervised
Support
support_lists() (in module mvpa2.support.nibabel.afni_niml)
surf_from_any() (in module mvpa2.datasets.gifti)
surf_project_nodewise() (mvpa2.misc.surfing.volsurf.VolSurf method)
surf_project_weights() (mvpa2.misc.surfing.volsurf.VolSurf method)
surf_project_weights_nodewise() (mvpa2.misc.surfing.volsurf.VolSurf method)
surf_unproject_weights_nodewise() (mvpa2.misc.surfing.volsurf.VolSurf method)
surface
Surface (class in mvpa2.support.nibabel.surf)
SurfaceQueryEngine (class in mvpa2.misc.surfing.queryengine)
SurfaceRingQueryEngine (class in mvpa2.misc.surfing.queryengine)
SurfaceSpec (class in mvpa2.support.nibabel.afni_suma_spec)
SurfaceVerticesQueryEngine (class in mvpa2.algorithms.searchlight_hyperalignment)
(class in mvpa2.misc.surfing.queryengine)
SurfaceVoxelsQueryEngine (class in mvpa2.misc.surfing.queryengine)
sv (mvpa2.mappers.svd.SVDMapper attribute)
SVD
SVDMapper (class in mvpa2.mappers.svd)
SVM, [1]
(class in mvpa2.clfs.sg)
(class in mvpa2.clfs.svm)
(class in mvpa2.clfs.warehouse)
(class in mvpa2.testing.clfs)
svm (mvpa2.clfs.sg.SVM attribute)
sweepargs() (in module mvpa2.testing)
SWIG

T

T (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
t0 (mvpa2.datasets.eep.EEPBin attribute)
table2string() (in module mvpa2.base.dochelpers)
(in module mvpa2.clfs.transerror)
(in module mvpa2.datasets.miscfx)
tail (mvpa2.clfs.stats.NullDist attribute)
TailSelector (class in mvpa2.featsel.helpers)
take_action() (mvpa2.misc.cmdline.Option method)
takes_value() (mvpa2.misc.cmdline.Option method)
Target
target2nearest_source() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
target2sources() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
targets (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
teardown_module() (in module mvpa2.tests)
tell() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
test() (in module mvpa2)
Testing Dataset
text() (mvpa2.base.report.Report method)
textbook
TextWrapper (class in mvpa2.base.state)
this (mvpa2.kernels.sg.RealFeatures attribute)
thisown (mvpa2.kernels.sg.RealFeatures attribute)
threshold (mvpa2.featsel.helpers.FixedErrorThresholdStopCrit attribute)
time() (mvpa2.base.report.datetime method)
Time-compression
timed() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
timesegments_classification() (in module mvpa2.algorithms.benchmarks.hyperalignment)
timeseries_boxplot() (in module mvpa2.misc.plot)
(in module mvpa2.misc.plot.base)
timetuple() (mvpa2.base.report.datetime method)
timetz() (mvpa2.base.report.datetime method)
tmodes (mvpa2.misc.fsl.melodic.MelodicResults attribute)
to_events() (mvpa2.misc.fsl.base.FslEV3 method)
(mvpa2.misc.fsl.FslEV3 method)
to_file_map() (mvpa2.misc.plot.lightbox.SpatialImage method)
to_filename() (mvpa2.misc.plot.lightbox.SpatialImage method)
to_files() (mvpa2.misc.plot.lightbox.SpatialImage method)
to_filespec() (mvpa2.misc.plot.lightbox.SpatialImage method)
to_gifti_image() (in module mvpa2.support.nibabel.surf_gifti)
to_lightsvm_format() (in module mvpa2.datasets.formats)
to_literal() (mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
to_niml() (in module mvpa2.datasets.niml)
to_npz() (mvpa2.base.dataset.AttrDataset method)
(mvpa2.base.learner.AttrDataset method)
(mvpa2.datasets.base.AttrDataset method)
(mvpa2.datasets.gifti.AttrDataset method)
(mvpa2.featsel.helpers.AttrDataset method)
(mvpa2.measures.base.AttrDataset method)
(mvpa2.misc.surfing.queryengine.AttrDataset method)
to_numeric() (mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
to_one_column_array() (in module mvpa2.misc.surfing.volgeom)
to_real_space() (mvpa2.atlases.base.SpaceTransformation method)
(mvpa2.atlases.warehouse.SpaceTransformation method)
to_three_column_array() (in module mvpa2.misc.surfing.volgeom)
to_vector() (in module mvpa2.misc.surfing.volgeom)
to_voxel_space() (mvpa2.atlases.base.SpaceTransformation method)
(mvpa2.atlases.warehouse.SpaceTransformation method)
to_xml() (in module mvpa2.support.nibabel.surf_gifti)
toarray() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
(mvpa2.misc.bv.BrainVoyagerRTC method)
(mvpa2.misc.bv.base.BrainVoyagerRTC method)
(mvpa2.misc.fsl.McFlirtParams method)
(mvpa2.misc.fsl.base.McFlirtParams method)
tocoo() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
tocsc() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method)
tocsr() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method)
todia() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
todo
todok() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
tofile() (mvpa2.misc.bv.base.ColumnData method)
(mvpa2.misc.bv.ColumnData method)
(mvpa2.misc.fsl.ColumnData method)
(mvpa2.misc.fsl.FslEV3 method)
(mvpa2.misc.fsl.McFlirtParams method)
(mvpa2.misc.fsl.base.ColumnData method)
(mvpa2.misc.fsl.base.FslEV3 method)
(mvpa2.misc.fsl.base.McFlirtParams method)
(mvpa2.misc.io.ColumnData method)
(mvpa2.misc.io.SampleAttributes method)
(mvpa2.misc.io.base.ColumnData method)
(mvpa2.misc.io.base.SampleAttributes method)
TraceBack (class in mvpa2.base.verbosity)
train() (mvpa2.algorithms.group_clusterthr.Learner method)
(mvpa2.algorithms.hyperalignment.ChainMapper method)
(mvpa2.algorithms.hyperalignment.Hyperalignment method)
(mvpa2.algorithms.searchlight_hyperalignment.Hyperalignment method)
(mvpa2.algorithms.searchlight_hyperalignment.Sphere method)
(mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.base.learner.CompoundLearner method)
(mvpa2.base.learner.Learner method)
(mvpa2.clfs.base.Learner method)
(mvpa2.clfs.meta.PredictionsCombiner method)
(mvpa2.datasets.base.ChainMapper method)
(mvpa2.datasets.cosmo.ChainMapper method)
(mvpa2.datasets.cosmo.CosmoQueryEngine method)
(mvpa2.datasets.cosmo.QueryEngineInterface method)
(mvpa2.mappers.base.ChainMapper method)
(mvpa2.mappers.base.Learner method)
(mvpa2.mappers.flatten.ChainMapper method)
(mvpa2.mappers.skl_adaptor.Learner method)
(mvpa2.measures.base.Learner method)
(mvpa2.measures.gnbsearchlight.Sphere method)
(mvpa2.measures.nnsearchlight.Sphere method)
(mvpa2.measures.searchlight.ChainMapper method)
(mvpa2.measures.searchlight.Sphere method)
(mvpa2.misc.neighborhood.CachedQueryEngine method)
(mvpa2.misc.neighborhood.IdentityNeighborhood method)
(mvpa2.misc.neighborhood.QueryEngine method)
(mvpa2.misc.neighborhood.QueryEngineInterface method)
(mvpa2.misc.neighborhood.Sphere method)
(mvpa2.misc.surfing.queryengine.QueryEngineInterface method)
(mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method)
(mvpa2.misc.surfing.volgeom.ChainMapper method)
(mvpa2.misc.surfing.volgeom.Sphere method)
train_pmeasure (mvpa2.featsel.base.IterativeFeatureSelection attribute)
(mvpa2.featsel.ifs.IterativeFeatureSelection attribute)
(mvpa2.featsel.rfe.IterativeFeatureSelection attribute)
traindataset (mvpa2.clfs.sg.SVM attribute)
trained (mvpa2.clfs.base.Classifier attribute)
(mvpa2.clfs.blr.Classifier attribute)
(mvpa2.clfs.enet.Classifier attribute)
(mvpa2.clfs.gda.Classifier attribute)
(mvpa2.clfs.glmnet.Classifier attribute)
(mvpa2.clfs.gnb.Classifier attribute)
(mvpa2.clfs.gpr.Classifier attribute)
(mvpa2.clfs.knn.Classifier attribute)
(mvpa2.clfs.lars.Classifier attribute)
(mvpa2.clfs.mass.Classifier attribute)
(mvpa2.clfs.meta.Classifier attribute)
(mvpa2.clfs.plr.Classifier attribute)
(mvpa2.clfs.ridge.Classifier attribute)
(mvpa2.clfs.smlr.Classifier attribute)
(mvpa2.testing.clfs.Classifier attribute)
Training Dataset
TransferMeasure (class in mvpa2.measures.base)
transfermeasure (mvpa2.measures.base.CrossValidation attribute)
transform_with_boxcar() (in module mvpa2.misc.support)
transpose() (mvpa2.algorithms.group_clusterthr.dok_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method)
(mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method)
TransposeMapper (class in mvpa2.mappers.shape)
trapz() (in module mvpa2.misc.errorfx)
TreeClassifier (class in mvpa2.clfs.meta)
triples2ijk() (mvpa2.misc.surfing.volgeom.VolGeom method)
truevar_per_ic (mvpa2.misc.fsl.melodic.MelodicResults attribute)
truncate() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
ttest
ttest() (in module mvpa2.support.nibabel.afni_niml_dset)
ttest_1samp() (in module mvpa2.misc.stats)
TuebingenMEG (class in mvpa2.misc.io.meg)
TuebingenMEGSensorLocations (class in mvpa2.misc.io)
(class in mvpa2.misc.io.base)
Tutorial, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12]
tutorial
TYPE_CHECKER (mvpa2.misc.cmdline.Option attribute)
TYPED_ACTIONS (mvpa2.misc.cmdline.Option attribute)
TYPES (mvpa2.misc.cmdline.Option attribute)
tzinfo (mvpa2.base.report.datetime attribute)
tzname() (mvpa2.base.report.datetime method)

U

uattrs (mvpa2.mappers.fx.FxMapper attribute)
Ubuntu
UC (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
ulabels (mvpa2.clfs.gda.GDA attribute)
(mvpa2.clfs.gnb.GNB attribute)
(mvpa2.clfs.warehouse.GNB attribute)
uncache() (mvpa2.misc.plot.lightbox.SpatialImage method)
unicode_whitespace_trans (mvpa2.base.state.TextWrapper attribute)
UniformLengthCollection (class in mvpa2.base.collections)
unique (mvpa2.base.collections.SequenceCollectable attribute)
unique_combinations() (in module mvpa2.misc.support)
unique_path_parts() (in module mvpa2.misc.plot.scatter)
uniquechunks (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
uniquetargets (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
unittests
UnivariateStatsModels (class in mvpa2.measures.statsmodels_adaptor)
unstructured_xy2grid_xy_vectors() (in module mvpa2.misc.plot.flat_surf)
untrain() (mvpa2.algorithms.group_clusterthr.Learner method)
(mvpa2.algorithms.hyperalignment.ChainMapper method)
(mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.base.learner.CompoundLearner method)
(mvpa2.base.learner.Learner method)
(mvpa2.clfs.base.Learner method)
(mvpa2.clfs.transerror.ClassifierError method)
(mvpa2.datasets.base.ChainMapper method)
(mvpa2.datasets.cosmo.ChainMapper method)
(mvpa2.datasets.cosmo.CosmoQueryEngine method)
(mvpa2.featsel.rfe.ClassifierError method)
(mvpa2.mappers.base.ChainMapper method)
(mvpa2.mappers.base.Learner method)
(mvpa2.mappers.flatten.ChainMapper method)
(mvpa2.mappers.skl_adaptor.Learner method)
(mvpa2.measures.base.Learner method)
(mvpa2.measures.searchlight.ChainMapper method)
(mvpa2.misc.neighborhood.CachedQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method)
(mvpa2.misc.surfing.volgeom.ChainMapper method)
update() (mvpa2.algorithms.group_clusterthr.Counter method)
(mvpa2.base.collections.Collection method)
(mvpa2.datasets.cosmo.Collection method)
update_header() (mvpa2.misc.plot.lightbox.SpatialImage method)
update_sensitivity (mvpa2.featsel.rfe.RFE attribute)
upper (mvpa2.clfs.warehouse.RangeElementSelector attribute)
(mvpa2.featsel.helpers.RangeElementSelector attribute)
usevalues (mvpa2.clfs.warehouse.OddEvenPartitioner attribute)
(mvpa2.generators.partition.OddEvenPartitioner attribute)
(mvpa2.testing.datasets.OddEvenPartitioner attribute)
uspace (mvpa2.base.state.TextWrapper attribute)
UT (mvpa2.algorithms.group_clusterthr.Dataset attribute)
(mvpa2.algorithms.hyperalignment.Dataset attribute)
(mvpa2.clfs.base.Dataset attribute)
(mvpa2.clfs.glmnet.Dataset attribute)
(mvpa2.clfs.gpr.Dataset attribute)
(mvpa2.clfs.knn.Dataset attribute)
(mvpa2.clfs.lars.Dataset attribute)
(mvpa2.clfs.meta.Dataset attribute)
(mvpa2.clfs.plr.Dataset attribute)
(mvpa2.clfs.smlr.Dataset attribute)
(mvpa2.clfs.stats.Dataset attribute)
(mvpa2.clfs.transerror.Dataset attribute)
(mvpa2.datasets.base.Dataset attribute)
(mvpa2.datasets.cosmo.Dataset attribute)
(mvpa2.datasets.eeglab.Dataset attribute)
(mvpa2.datasets.eep.Dataset attribute)
(mvpa2.datasets.eventrelated.Dataset attribute)
(mvpa2.datasets.formats.Dataset attribute)
(mvpa2.datasets.gifti.Dataset attribute)
(mvpa2.datasets.miscfx.Dataset attribute)
(mvpa2.datasets.mri.Dataset attribute)
(mvpa2.datasets.niml.Dataset attribute)
(mvpa2.mappers.filters.Dataset attribute)
(mvpa2.mappers.fx.Dataset attribute)
(mvpa2.mappers.fxy.Dataset attribute)
(mvpa2.mappers.glm.Dataset attribute)
(mvpa2.mappers.shape.Dataset attribute)
(mvpa2.mappers.zscore.Dataset attribute)
(mvpa2.measures.anova.Dataset attribute)
(mvpa2.measures.base.Dataset attribute)
(mvpa2.measures.corrcoef.Dataset attribute)
(mvpa2.measures.irelief.Dataset attribute)
(mvpa2.measures.noiseperturbation.Dataset attribute)
(mvpa2.measures.rsa.Dataset attribute)
(mvpa2.measures.searchlight.Dataset attribute)
(mvpa2.measures.statsmodels_adaptor.Dataset attribute)
(mvpa2.measures.winner.Dataset attribute)
(mvpa2.misc.data_generators.Dataset attribute)
(mvpa2.misc.plot.flat_surf.Dataset attribute)
(mvpa2.testing.clfs.Dataset attribute)
(mvpa2.testing.datasets.Dataset attribute)
utcfromtimestamp() (mvpa2.base.report.datetime method)
utcnow() (mvpa2.base.report.datetime method)
utcoffset() (mvpa2.base.report.datetime method)
utctimetuple() (mvpa2.base.report.datetime method)

V

value (mvpa2.algorithms.group_clusterthr.Parameter attribute)
(mvpa2.algorithms.hyperalignment.Parameter attribute)
(mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute)
(mvpa2.base.attributes.Collectable attribute)
(mvpa2.base.collections.Collectable attribute)
(mvpa2.base.param.Parameter attribute)
(mvpa2.clfs.base.Parameter attribute)
(mvpa2.clfs.gda.Parameter attribute)
(mvpa2.clfs.glmnet.Parameter attribute)
(mvpa2.clfs.gnb.Parameter attribute)
(mvpa2.clfs.gpr.Parameter attribute)
(mvpa2.clfs.meta.Parameter attribute)
(mvpa2.clfs.smlr.Parameter attribute)
(mvpa2.clfs.transerror.Collectable attribute)
(mvpa2.kernels.base.Parameter attribute)
(mvpa2.kernels.libsvm.Parameter attribute)
(mvpa2.kernels.np.Parameter attribute)
(mvpa2.kernels.sg.Parameter attribute)
(mvpa2.mappers.detrend.Parameter attribute)
(mvpa2.mappers.filters.Parameter attribute)
(mvpa2.mappers.fx.Parameter attribute)
(mvpa2.mappers.glm.Parameter attribute)
(mvpa2.mappers.procrustean.Parameter attribute)
(mvpa2.measures.rsa.Parameter attribute)
value2idx() (in module mvpa2.datasets.eventrelated)
(in module mvpa2.misc.support)
values() (mvpa2.clfs.base.AttributeMap method)
(mvpa2.clfs.meta.AttributeMap method)
(mvpa2.datasets.formats.AttributeMap method)
(mvpa2.measures.base.AttributeMap method)
(mvpa2.misc.attrmap.AttributeMap method)
(mvpa2.misc.plot.AttributeMap method)
(mvpa2.misc.plot.base.AttributeMap method)
(mvpa2.misc.surfing.volume_mask_dict.Mapping method)
var (mvpa2.mappers.mdp_adaptor.PCAMapper attribute)
variance_1sv() (in module mvpa2.misc.errorfx)
variances (mvpa2.clfs.gnb.GNB attribute)
(mvpa2.clfs.warehouse.GNB attribute)
vector_alignment_find_rotation() (in module mvpa2.misc.plot.flat_surf)
(in module mvpa2.support.nibabel.surf)
verbosity, [1]
Version (class in mvpa2.misc.support)
version (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
version_to_tuple() (in module mvpa2.misc.support)
vertex_id2nearest_feature_id() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method)
(mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method)
vertices (mvpa2.support.nibabel.surf.Surface attribute)
view() (mvpa2.datasets.base.HollowSamples method)
(mvpa2.testing.datasets.HollowSamples method)
VolGeom (class in mvpa2.misc.surfing.volgeom)
volgeom (mvpa2.misc.surfing.volsurf.VolSurf attribute)
(mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary attribute)
VolSurf (class in mvpa2.misc.surfing.volsurf)
VolSurfMapping (class in mvpa2.misc.surfing.volsurf)
VolSurfMaximalMapping (class in mvpa2.misc.surfing.volsurf)
VolSurfMinimalLowresMapping (class in mvpa2.misc.surfing.volsurf)
VolSurfMinimalMapping (class in mvpa2.misc.surfing.volsurf)
VolumeBasedSurface (class in mvpa2.misc.surfing.volsurf)
VolumeMaskDictionary (class in mvpa2.misc.surfing.volume_mask_dict)
vonoroi_map_to_high_resolution_surf() (mvpa2.support.nibabel.surf.Surface method)
voxdim (mvpa2.atlases.base.XMLBasedAtlas attribute)
(mvpa2.atlases.fsl.XMLBasedAtlas attribute)
(mvpa2.atlases.warehouse.XMLBasedAtlas attribute)
voxel_count_nifti_image() (mvpa2.misc.surfing.volsurf.VolSurfMapping method)
voxel_selection() (in module mvpa2.misc.surfing.surf_voxel_selection)
VoxelSelector (class in mvpa2.misc.surfing.surf_voxel_selection)
VProperty (class in mvpa2.misc.vproperty)
vstack() (in module mvpa2.algorithms.benchmarks.hyperalignment)
(in module mvpa2.base.dataset)
(in module mvpa2.datasets.sources.openfmri)
(in module mvpa2.featsel.base)
(in module mvpa2.mappers.filters)
(in module mvpa2.measures.anova)
(in module mvpa2.measures.base)
(in module mvpa2.measures.winner)
(in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)

W

Warehouse (class in mvpa2.clfs.warehouse)
warning, [1]
WarningLog (class in mvpa2.base)
WaveletPacketMapper (class in mvpa2.mappers.wavelet)
WaveletTransformationMapper (class in mvpa2.mappers.wavelet)
Weight Vector
weights (mvpa2.clfs.enet.ENET attribute)
(mvpa2.clfs.lars.LARS attribute)
(mvpa2.clfs.smlr.SMLR attribute)
(mvpa2.clfs.warehouse.LARS attribute)
(mvpa2.clfs.warehouse.SMLR attribute)
(mvpa2.testing.clfs.SMLR attribute)
which_set() (mvpa2.base.state.Collection method)
white_surface (mvpa2.misc.surfing.volsurf.VolSurf attribute)
whitespace_trans (mvpa2.base.state.TextWrapper attribute)
Who is using it?
Windows
Windows installer
WinnerMeasure (class in mvpa2.measures.winner)
wipe_out_offdiag() (in module mvpa2.algorithms.benchmarks.hyperalignment)
with_setup() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
with_tempfile() (in module mvpa2.testing)
(in module mvpa2.testing.tools)
wordsep_re (mvpa2.base.state.TextWrapper attribute)
wordsep_simple_re (mvpa2.base.state.TextWrapper attribute)
wr1996() (in module mvpa2.misc.data_generators)
(in module mvpa2.testing.datasets)
wrap() (mvpa2.base.state.TextWrapper method)
writable() (mvpa2.support.nibabel.afni_niml.BytesIO method)
write() (in module mvpa2.datasets.niml)
(in module mvpa2.support.nibabel.afni_niml)
(in module mvpa2.support.nibabel.afni_niml_annot)
(in module mvpa2.support.nibabel.afni_niml_dset)
(in module mvpa2.support.nibabel.afni_suma_1d)
(in module mvpa2.support.nibabel.afni_suma_spec)
(in module mvpa2.support.nibabel.surf)
(in module mvpa2.support.nibabel.surf_fs_asc)
(in module mvpa2.support.nibabel.surf_gifti)
(mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.base.report.Report method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
(mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method)
(mvpa2.support.nibabel.surf.Surface method)
writelines() (mvpa2.base.dochelpers.StringIO method)
(mvpa2.base.info.StringIO method)
(mvpa2.clfs.transerror.StringIO method)
(mvpa2.support.nibabel.afni_niml.BytesIO method)
WTF (class in mvpa2.base.info)
wtf() (in module mvpa2)
(in module mvpa2.base.info)
(in module mvpa2.tests)

X

x (mvpa2.base.state.TextWrapper attribute)
XAVRSensorLocations (class in mvpa2.misc.io)
(class in mvpa2.misc.io.base)
xml() (mvpa2.base.report.Report method)
XMLBasedAtlas (class in mvpa2.atlases.base)
(class in mvpa2.atlases.fsl)
(class in mvpa2.atlases.warehouse)
xrandom_iterprod() (in module mvpa2.generators.partition)
(in module mvpa2.misc.support)
xrandom_unique_combinations() (in module mvpa2.misc.support)
xunique_combinations() (in module mvpa2.misc.support)
xyz2ijk() (mvpa2.misc.surfing.volgeom.VolGeom method)
xyz2lin() (mvpa2.misc.surfing.volgeom.VolGeom method)
xyz_source() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)
xyz_target() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)

Z

zeros() (in module mvpa2.clfs.gda)
(in module mvpa2.clfs.gnb)
zscore() (in module mvpa2.algorithms.benchmarks.hyperalignment)
(in module mvpa2.algorithms.hyperalignment)
(in module mvpa2.mappers.zscore)
ZScoreMapper (class in mvpa2.algorithms.hyperalignment)
(class in mvpa2.mappers.zscore)