mvpa2.misc.fsl.FslEV3

Inheritance diagram of FslEV3
class mvpa2.misc.fsl.FslEV3(source)

IO helper to read FSL’s EV3 files.

This is a three-column textfile format that is used to specify stimulation protocols for fMRI data analysis in FSL’s FEAT module.

Data is always read as float.

Attributes

durations
intensities
ncolumns Returns the number of columns.
nevs Returns the number of EVs in the file.
nrows Returns the number of rows.
onsets

Methods

clear(() -> None.  Remove all items from D.)
copy(() -> a shallow copy of D)
fromkeys(...) v defaults to None.
get((k[,d]) -> D[k] if k in D, ...)
get_ev(evid) Returns a tuple of (onset time, simulus duration, intensity) for a certain EV.
has_key((k) -> True if D has a key k, else False)
items(() -> list of D’s (key, value) pairs, ...)
iteritems(() -> an iterator over the (key, ...)
iterkeys(() -> an iterator over the keys of D)
itervalues(...)
keys(() -> list of D’s keys)
pop((k[,d]) -> v, ...) If key is not found, d is returned if given, otherwise KeyError is raised
popitem(() -> (k, v), ...) 2-tuple; but raise KeyError if D is empty.
select_samples(selection) Return new ColumnData with selected samples
setdefault((k[,d]) -> D.get(k,d), ...)
to_events(\*\*kwargs) Convert into a list of Event instances.
tofile(filename) Write data to a FSL EV3 file.
update(([E, ...) If E present and has a .keys() method, does: for k in E: D[k] = E[k]
values(() -> list of D’s values)
viewitems(...)
viewkeys(...)
viewvalues(...)

Read and write FSL EV3 files.

Parameters:

source : str

Filename of an EV3 file

Attributes

durations
intensities
ncolumns Returns the number of columns.
nevs Returns the number of EVs in the file.
nrows Returns the number of rows.
onsets

Methods

clear(() -> None.  Remove all items from D.)
copy(() -> a shallow copy of D)
fromkeys(...) v defaults to None.
get((k[,d]) -> D[k] if k in D, ...)
get_ev(evid) Returns a tuple of (onset time, simulus duration, intensity) for a certain EV.
has_key((k) -> True if D has a key k, else False)
items(() -> list of D’s (key, value) pairs, ...)
iteritems(() -> an iterator over the (key, ...)
iterkeys(() -> an iterator over the keys of D)
itervalues(...)
keys(() -> list of D’s keys)
pop((k[,d]) -> v, ...) If key is not found, d is returned if given, otherwise KeyError is raised
popitem(() -> (k, v), ...) 2-tuple; but raise KeyError if D is empty.
select_samples(selection) Return new ColumnData with selected samples
setdefault((k[,d]) -> D.get(k,d), ...)
to_events(\*\*kwargs) Convert into a list of Event instances.
tofile(filename) Write data to a FSL EV3 file.
update(([E, ...) If E present and has a .keys() method, does: for k in E: D[k] = E[k]
values(() -> list of D’s values)
viewitems(...)
viewkeys(...)
viewvalues(...)
durations
get_ev(evid)

Returns a tuple of (onset time, simulus duration, intensity) for a certain EV.

intensities
nevs

Returns the number of EVs in the file.

onsets
to_events(**kwargs)

Convert into a list of Event instances.

Parameters:

kwargs

Any keyword arugment provided would be replicated, through all the entries. Useful to specify label or even a chunk
tofile(filename)

Write data to a FSL EV3 file.